7000000352: Human stool microbial communities from NIH, USA - visit 1, subject 763860675

Overview

Basic Information

• IMG/M Taxon OID: 7000000352
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052891 | Ga0030482
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 763860675
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 189032240
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039147	Metagenome	164	N
F042910	Metagenome	157	N
F051935	Metagenome	143	N
F075480	Metagenome	119	N
F101191	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C3258525	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	721
C3357280	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2261
SRS014923_WUGC_scaffold_14046	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae	7241
SRS014923_WUGC_scaffold_43520	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6139
SRS014923_WUGC_scaffold_57686	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3667

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3258525	C3258525__gene_246918	F075480	LVLVLTTAYAAVVTHTELVWNAGHPIENEADDRLGLLTGKAGTSGDSLTIGGVTFTVQDGIYSPETGQLFASAVISADESVQLVGVESDMEWEVRAVTPVSEKLDPSGISWAEWAEQNGKTLVPVRMEIRGSEQFPNIPMFGDFLTQNPDGTVSVGFQVDLSEEDVSHLKSCEVQLECRVGAFGKDGKATQWQKEILTATITFK
C3357280	C3357280__gene_290001	F101191	MLLCGFDLDKALSSRDPLDCMAEAVADDTKRIGTTCGGGIFRAVPHEFDPESGSHRLPFAGSIRLIDWRVTLSGTMLDVTPENLARLLPSDTEMTERVTTLTPKQARKPLSRLCWIGTTSRGLLLIELRNPLCISGASLTSVPDGAGRLPFTFLAQNDRPGDVNLPARLYWWKEETHDAA
SRS014923_WUGC_scaffold_14046	SRS014923_WUGC_scaffold_14046__gene_19908	F039147	MRARRLLILLMMLLLLPQAQAERLTLYTRPGQVDEATPFQLRPTELSICSVTRAMGGAVVLANDDNYDSLSLYFWQDGMTEMRKLGGGFYWVMSSDTMETAQESCEYAMSRVPNYRMPDLTHAISNLTSDGETLYALNRINGLIFKISETKDGLQTEDVCTMANLSCLNISYRDLETDKVYTYPASLTRMHVCGSVLAISVMQENAIKVVLVDLTDGAIREIADESLEAMYEWADGELLLWRLEGSSNEISRSSGTYTLSRYSVATGEETLLSTGVPYKKRSECGAYDPYSGSYYDVRTRQIVRTTDFVQEDPVVTFPAANVNIAVTKDSIVGVNLSSVYVRSKENGDMTVLRIQSSNGASNTALQHFAEENPEVILAQETLTKSAVNAASLAARMSASADAPDILRLGLTPDTPEADGSWPLDVLMDKGWCMDLSVYPEVSDYVSRLNGIYRDAVTRDGKIYALPIYAWSYGYFISRNVMEKLGLQESDIPTNLIDLCAFITKWNDNLTGAYAAYTPLEETESYRERVFDLMVRDWIGYCQAENIPLRFDHPVFREMMAALDAMRTDKIEQANQQVNEEISDYRECLIWTDAQAVGNFANYADAFGSRIFLPMALTPDVTTHYGIGYMTVLVVNPRTTNAELVGKLLAQVIADQEATAKCVLLADYDEPIEDSYYLIMVNDYEKTLTELRRQQENAPVWKKQGIQERINEEEASLQRYTVRERWTIAPKTIELYQQTILPMSYLRRPGILADSDAFSALVSQVHQGEISLEEFVEKADKLIEGLEQ
SRS014923_WUGC_scaffold_43520	SRS014923_WUGC_scaffold_43520__gene_77607	F051935	MKRLLGLLLAVMVMMGGISCAVAENANPLVSDWLTELKSKRLIQIVEDEIGEGWTLYQPNGREEEENFSSVANLKEMRFLPVVAQKGNQLRLLILRKQGDLWKVSEQNDRALMRDGWTLQNFSAMPYGNSDWTYIFFDFVDENQKRWELMLNLGDGYVSSFGTISYYVEGYGTTYINMNYDRGLEFLIDAPAYSRFSYEVYPVERYSFGVEDFDLATCPLTMQEFLVPAIVTCGEEGAGLYIMVQQDVQPIVTLADGDAIEAIPQKWELDWTIVYYQGNYLFMKTENCKMEE
SRS014923_WUGC_scaffold_57686	SRS014923_WUGC_scaffold_57686__gene_115916	F042910	LLRRQREQLSLRVRFLIEEYDIAARHQLLHLVAAWAEAGGVLTLHEDGKRVLRVVCTQYPTMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDTAITTLTISAAGKISFQGLTLAPGAAVRIHHNAGVFAAEMVSDDSTVSILPYRTPDSADDLLLRPGVLNEIRVEAGSAAFVSGRCKGRYC