7000000350: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160582958

Overview

Basic Information

• IMG/M Taxon OID: 7000000350
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052888 | Ga0027959
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160582958
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 19213694
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055792	Metagenome	138	N
F081510	Metagenome	114	N
F103431	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C879408	Not Available	659
SRS017687_Baylor_scaffold_11825	All Organisms → cellular organisms → Bacteria → Proteobacteria	936
SRS017687_Baylor_scaffold_17140	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	9204

Sequences

Scaffold ID	Protein ID	Family	Sequence
C879408	C879408__gene_35055	F055792	MEIASQALDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALESNLSIDSTLEEVGPVLIDKGDDGTEAGTTWGRYPLETLQKEGYILFEGRMLPCETRGVDPRSSVKSLDLESRIIGEAIEPVALPHVARLDEGIPLQRIGGLRDLLVTPDVSQADDL
SRS017687_Baylor_scaffold_11825	SRS017687_Baylor_scaffold_11825__gene_10403	F103431	MINLDALIVGMLFFIQLFLQGIAWRVAIAHFLHAERGNATAAAFDGAFRENIADCHAEDDNDKDAESQKEGFHVCIPEG
SRS017687_Baylor_scaffold_17140	SRS017687_Baylor_scaffold_17140__gene_18857	F081510	MKLPKLNVKAIKAGAKTTYNTAKILGKKYAPIALVTTGLVGYGIAVYQGIKSGKKLESTKAKYEAKDAAGEEYTRLDVIKDVTKDVAVPVAIAVASTAAIGLGFAIQTNRLKAVSAALTAVTEEHARYRLQCKEVLDEETFKKIDTPMDQVTVEEDGKEAQSFVPKEGLMYGNWFKYSANYASDSPEYNEQWIRESIRVLEEKIARKGLLNFSDMLDQLGFDVPKAALPFGWTDTDGFYIEYDIMEVWNAEEQVHEPQIYVRWKCPRNLYATTNFRDLIPGRKELA