7000000348: Human stool microbial communities from NIH, USA - visit 1, subject 160582958

Overview

Basic Information

• IMG/M Taxon OID: 7000000348
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052886 | Ga0030515
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 160582958
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 116563837
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → environmental samples → Firmicutes bacterium CAG:321	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041208	Metagenome	160	N
F068941	Metagenome	124	N
F088921	Metagenome	109	N
F089054	Metagenome	109	N
F092228	Metagenome	107	N
F101192	Metagenome	102	N
F102166	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1833847	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	660
C1866283	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	948
C1880501	All Organisms → Viruses → Predicted Viral	1186
C1887909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1364
C1891022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1455
C1897014	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → environmental samples → Firmicutes bacterium CAG:321	1683
SRS017701_Baylor_scaffold_1019	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	11976

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1833847	C1833847__gene_115063	F088921	LGAAIRLYKIGAGENHFLCSEKSKSTVFDLDREAKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVA
C1866283	C1866283__gene_130247	F092228	NDGMLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGDKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVISKNSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDKTDEYGYSFKVVKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCKDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIIRKTVESPYNGIWKLEVGSNKPAKIADKCDCDELLATKNFLYCYTINYILPRGVANLWVKGYLIDQLAIS
C1880501	C1880501__gene_137614	F101192	SGTQTSLCQRMRSVTVYRGLTYWEVQQIAKAAPTSITPCGEDTIRRWVSGRYQIALRFNRYDVCLGVEEEIDG
C1887909	C1887909__gene_141602	F041208	TAAVAETSAPYAPETVLPLVANNRPYRDFARGAISSSEDAIEQAKAWLYLPLFVTNFSAKSEAVDWSAMRAEEGWYVTAYMRNTFVWLLMDEQGRVQAYDFDLLGNASLTYDGALPDNLDEAISSYIRRFADLNGFVEVADYAREEVTTFGDYAVAVTVQVTLDSTPYRFTMRLDMMAFTSVENANLHPTAAQTQRDILLLMRDNLAEKGVDITQTFFAVQTDDADGETKLTGIASFPADAASDAIREQYGELERYTLHYSGCASEAGIERVELSDWQETTATAQFPLALYALVDGKYLVPDGELAAGTAYLALDSMGLRGRNVIPLESITMLTRIRYARADGTFAESWVSSDTLTENDAAPAAPKREPIPTLESYQITLSGTAYTAFAINKVEKGYDAFADIAGTQTAVVDVLTSAAQGVIAEYGVDASDLLCRTVVEYGYRADKGCWQVDFT
C1891022	C1891022__gene_143466	F102166	MEETWRISPEMRAFLMKKLFSLLLVLALALVPTLSLADDDAACQNLYNMLLDELKSVDLEMTADEESYRIYLGYALDKNSLGDADVIFDAYSDAVTINVSYSNPLDEALVPQVISFFNRVNSTLYVGKLMVIKSDNVWYAAYEIFLSVDPENITDWDRNNVLAYTALALDTMEEMVDYITEIANGESADNVFAMWQ
C1897014	C1897014__gene_147017	F068941	MDNKKFIIGVVLLLLLMLGGTYAYYKWSSSDNMDVNVKIDGGTVTFNGGSNITSTIIPTASKEEGIKKDITVKASKAGVTMNLYMNLTTMPDELKEKSFEYEIYYNSSTLVKKGNFGVYNSNTNTSGIAYATSGVTTLTLFTGRDVSTNSADKYTLYLWFNGKDYTNPNTMQSKKLSFDLYATGENAVLAGN
SRS017701_Baylor_scaffold_1019	SRS017701_Baylor_scaffold_1019__gene_2808	F089054	MLTKGKFPVSFEVPGHTKDYPEGFTEEMVIPYRTEELNPYLRYPHQEINKNHLHSEFIRLMLREILQINLSDITIIDIIPLP