7000000346: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159632143

Overview

Basic Information

• IMG/M Taxon OID: 7000000346
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052884 | Ga0031035
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159632143
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 82983408
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga gingivalis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041827	Metagenome	159	Y
F042387	Metagenome	158	N
F049707	Metagenome	146	N
F054111	Metagenome	140	N
F063778	Metagenome	129	Y
F095632	Metagenome	105	N
F101358	Metagenome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C2612005	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	746
C2643457	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1628
SRS016360_Baylor_scaffold_2555	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga gingivalis	829
SRS016360_Baylor_scaffold_56281	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	891
SRS016360_Baylor_scaffold_65694	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1365
SRS016360_Baylor_scaffold_69311	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1214
SRS016360_Baylor_scaffold_69708	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1311

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2612005	C2612005__gene_143542	F042387	MTDETLVNSAKMQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGSGERVVFVYEKDFITSKIRYSQSGEELGKTNYQYNNGKLSSVIDEAVISDSGIQYKKVITREYSYNSSEVSVNENVKYHSESYAYNLKDENFTHTYVLNGENIIKIHHEISKNVPSGHFYLNPNNMVVIDEEVTYDTKNSPYKNIKGFSVLAVEFCGLDKDENTIADYLNFRWVSHNPTLIKKSINLYGS
C2643457	C2643457__gene_153430	F049707	VVSEYKSPHNDGHDPYILIWEYGTEVQQAEFTERWAEYEPDTGWTVWHFRLEDGRVMKFRALEWEQRDDVNHLTTIYFVPKQKES
SRS016360_Baylor_scaffold_2555	SRS016360_Baylor_scaffold_2555__gene_2334	F054111	MNKSLESITHEEFLKLMERLKNLQELTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLFLETEALSTSDR
SRS016360_Baylor_scaffold_56281	SRS016360_Baylor_scaffold_56281__gene_67777	F041827	LLLSCNRDIENNENNETPAPPKEERLVLASLYEFGSNVRFQYKNGNEINRMAMDGPHGEASMDFEYDTYGRIVKERRFHHRSDYGETIITYQYDNQSRLTSSHAISTQYYPDTGYTPRCSIEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLFVENGKVVKSLDENNQIIETIEYLNTKNTLRNMKGFPALVVEFYIRPFTYELPFYNGIEHIEDLRFIDNIKTRDFHNGSYWEYRYSYDKGKSHDNDYLEIEEVNIYEKSHNDPTHDNYLSSASPARFYTKEK
SRS016360_Baylor_scaffold_65694	SRS016360_Baylor_scaffold_65694__gene_82365	F095632	MTMSFKETTGYKVVNFVASTTASITAGAVVSALCPPAGVALTVVYSLGSGVLGSYVGDKAGQQYAENFAETIDSIKTPSNN
SRS016360_Baylor_scaffold_69311	SRS016360_Baylor_scaffold_69311__gene_89366	F063778	LMPETISEGAQQKLLQQLQDALGLVAEADTSAHDVAAITHSATDGHQLTELMLQELTTAREYLKSCADQIEHAISNVKAIPLDPPPDD
SRS016360_Baylor_scaffold_69708	SRS016360_Baylor_scaffold_69708__gene_90326	F101358	DGTPQERATHPDTHIIPKRQDVPRHRWNVLRSSGQLDEGWIDREIIDKDGTVLVRMTKPVHRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGVMVKDGRLQPVADTTHATTSSQEQQTEILPAQGADTHEHLDGDSARRLVGSVAAKASDGEVDNSPLVERVLGRAE