7000000332: Human stool microbial communities from NIH, USA - visit 1, subject 763901136

Overview

Basic Information

• IMG/M Taxon OID: 7000000332
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052870 | Ga0030485
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 763901136
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 150141932
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F074899	Metagenome / Metatranscriptome	119	N
F087336	Metagenome	110	N
F088914	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C3461080	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1055
SRS015133_WUGC_scaffold_21203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	2353
SRS015133_WUGC_scaffold_27995	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4153
SRS015133_WUGC_scaffold_5345	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3178

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3461080	C3461080__gene_201610	F013656	LKNDIKKIYKEPIKEEMETTINVLYKEKKLAIYTNKVDLQKQLNKLIGKPIKEYKIKRSIGGSLWEIALDDKIKIQKVIVKANIYEL
SRS015133_WUGC_scaffold_21203	SRS015133_WUGC_scaffold_21203__gene_36926	F074899	MSGWKQWSKQAVTSSFLDKKPPKSLVQQGLEGSTPVGKDEVGSSNLPSSSK
SRS015133_WUGC_scaffold_27995	SRS015133_WUGC_scaffold_27995__gene_49887	F088914	LQRLFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIVTELTDGRVSDRLFSVPYTPKENIKNPGKFIVFSAWYAAKALEMDVK
SRS015133_WUGC_scaffold_5345	SRS015133_WUGC_scaffold_5345__gene_9542	F087336	MHCLLRGMVAELEQVPKAFRAAGRQRRAAAKERIKDDAIGYGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLEIAFQILPLKSKQKRAP