7000000326: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763435843

Overview

Basic Information

• IMG/M Taxon OID: 7000000326
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052854 | Ga0031237
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763435843
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 78184132
• Sequencing Scaffolds: 14
• Novel Protein Genes: 15
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F045567	Metagenome	152	N
F051212	Metagenome	144	N
F051213	Metagenome	144	N
F057446	Metagenome	136	N
F071327	Metagenome	122	N
F071328	Metagenome	122	N
F072446	Metagenome	121	N
F076191	Metagenome	118	N
F077404	Metagenome	117	N
F080164	Metagenome	115	N
F089055	Metagenome	109	Y
F094007	Metagenome	106	N
F097490	Metagenome	104	N
F103432	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2806981	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	588
C2813479	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	628
C2830154	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	770
C2838238	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron	883
C2845886	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1048
C2858470	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1712
C2859066	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1774
SRS013879_WUGC_scaffold_19344	Not Available	3086
SRS013879_WUGC_scaffold_24481	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	8203
SRS013879_WUGC_scaffold_25334	Not Available	676
SRS013879_WUGC_scaffold_36009	All Organisms → cellular organisms → Bacteria	7529
SRS013879_WUGC_scaffold_46350	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	731
SRS013879_WUGC_scaffold_48167	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	536
SRS013879_WUGC_scaffold_6152	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1223

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2806981	C2806981__gene_114908	F057446	ITSYPEYFEITDNKKTSKLLYLSASFVFIAIYLFDLYQNDFDFGKVAYFKTISAVLWLVIFALQFWLINTESKIEKSKIKEIVVRKNRWASIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR
C2813479	C2813479__gene_117544	F097490	CFFYWMFLKTQKMNKKMNVFCKIILPLLCIISCSKRDEIEVYNMELDENKKEVLVEIRNNTENNYYLLSPIVSIMTKHLQYIDGEMIEGQIHHKKLDSIVCSVYIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYDNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM
C2830154	C2830154__gene_124442	F030786	MLVVMIVTGSLQLLLKNGSAVKGGNAMGAKKISLADITGGDNSETGVLKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC
C2838238	C2838238__gene_127961	F077404	IYIPPALEQYADTALLHQRFNVENKGNYLYTPFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKADKGFIILTSYLVVLGDSYAFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTPNDRIELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENRYTRGRKLILTDGHSTLYLYFLMIDSVAPNFDTEVLPYIKGVFRFNRFR
C2845886	C2845886__gene_131229	F094007	SVKSRGVFCGVDYLWILWYNSYYMKSKTVEVLELARPNRAGVIDVVDSDGNVVPLDYLGEDFVPDANSYSDEDFTKRNRIIVEMCDLFGRIRRRAGFAERHRGRGDYDRARRIERNRGSDISEVGRLAISACEACPLKLDCELYGKLGGAVLSDVLDYKKVRTATSLTKAGKKRSGWNKGCIDNNA
C2858470	C2858470__gene_137030	F051212	MKKFFFIFVLYWLHSCNGTEKAMPTSPDTQKTSISEKQNTEKIERVIYESGGDKSGKNVHLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSEELIMDLPTTKIIIKTDKKEYSKTDIQANKTWDYITKQIIDIKYSQLYNHLNLEK
C2859066	C2859066__gene_137332	F071327	MEDLFNSVYSTHKGISFSTVVVFGAFIFLILQVHLSYKGRISDVLRKTSFFSMILLYIQGILGVFLGIYSPEFSEASGFSSYFKLFEYGIIILTCAGMITYVYMFLKSNQILTLKVLIIALAAALLFEYAYPWRI
SRS013879_WUGC_scaffold_19344	SRS013879_WUGC_scaffold_19344__gene_19258	F080164	MVGLTLCAAPQVTLRERANAFPLITEKEASEIYEPYAWRLPVVPLSLDNREIFNFVKYPTLPSLFGGILTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGLGVRTAPKLFGIKGMHVYGVQKDGSRQAVDEQVTLHLPGFEKAEKPFLYKGQAGRLVLCEYYSSHRGDLLLDAANARPEIFGELNPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPARS
SRS013879_WUGC_scaffold_19344	SRS013879_WUGC_scaffold_19344__gene_19259	F103432	MKLIHSLFSLSLLLALSGLFCTTACQDEAEPTQRAGLISTDSLIHAAKVYDGKAFEHVVSTTAAGLRVSEPRRIVPMLPRQLHVEMEGKTIFRRHNLPSVSAYSFQVLAVGDTIYRQKESDAQFNADLDALFHQSIGIAPRLFGVKELSVLGIDSRGKTRDLGNYSCPLLQGKIKNVNYRTREGVFHEHYEAASVDTFSVKDEWLLNTKAEPSLYVPSFRLLVWDQPAEGCTKLRFTLTLVDGRSLVTEVPLY
SRS013879_WUGC_scaffold_24481	SRS013879_WUGC_scaffold_24481__gene_25261	F072446	MHEFDAQAHKNKFNPPTHPQMKKLVFLLFGLCLYCFTACDSDHEPTKPVRPFHGDTLAQIAWNFPYIVEHHYHSIPGIVPEGTTYRVPVIPRSVEDRTKKEYNEQDVDKVAHLVFRATVHGDTLNRHKKELETLARQLHALILPTIGTSPVLCGVKSIKAVGVAENGRTYDLRREMKLRIRDYKSRRKYNSGRLVTLDCEDTESMTARYVVVLGEIREAELAEHIQPELKFYLPVKRCMDFSSIRFDITLFNGEVLSFQHKLPSKSVLQELPNKSVLENYKQYGFIPESTYFTTLWPVPEKEIER
SRS013879_WUGC_scaffold_25334	SRS013879_WUGC_scaffold_25334__gene_26266	F071328	ERMKWEFISEVECIVEFVKLCKHLVLERTIDPKIHQTTAIYLRYSQQLLLKKKRAIRRLGIGKKNVSAILRLCGIHYREYGDDEHRVFFLDTDVNIYFCKHYQLPIYILQRIEFSNKEYRSFILKVLPVKKGEW
SRS013879_WUGC_scaffold_36009	SRS013879_WUGC_scaffold_36009__gene_39343	F076191	MKIIAENPAEEALLWRIKALSDELVNQDNRSTSMPVWTILDNNKAGKDYGAVMYFTGKAAEQHIKENVHHYEKPMTYIRSAHDNRELKDVIHLLILAGGNEIPSNHYGTLRDA
SRS013879_WUGC_scaffold_46350	SRS013879_WUGC_scaffold_46350__gene_54215	F089055	PECVTKTPEIEAREKLAAIFSDAERCDNSKVNPELGKTAIDIENTSRMNSADDGAVYLCNQALGSYEKSLDHINNGPLETVQTIGISLQRLREYKTERSCR
SRS013879_WUGC_scaffold_48167	SRS013879_WUGC_scaffold_48167__gene_57705	F051213	SKLLWAVVMALTFVFTSCDPFSQNEPTIEGDRYKYFDSSAQRQSFRVVNGSGKPYNHKVDWHIIGIQEENSDTYLTKKVDTLSNGDFRISYDWVTFTVKENKSVIDVEVQKNETGKDRSVFFATSNSYKQAYLPNMIVTQRAK
SRS013879_WUGC_scaffold_6152	SRS013879_WUGC_scaffold_6152__gene_5225	F045567	MRQRDGRDTLTEELEGSITPLLYRAEGETRRPWVRMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVFVSQEDRIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHWAATAYLGDTSAGARTEKNYLHVSRRESYHGKEKPHLTEREGAW