7000000324: Human hard palate microbial communities from NIH, USA - visit 2, subject 765560005

Overview

Basic Information

• IMG/M Taxon OID: 7000000324
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052852 | Ga0028995
• Sample Name: Human hard palate microbial communities from NIH, USA - visit 2, subject 765560005
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 65280762
• Sequencing Scaffolds: 17
• Novel Protein Genes: 22
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → Viruses → Predicted Viral	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	1
Not Available	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ8	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Hard Palate → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040685	Metagenome	161	N
F043235	Metagenome	156	N
F047508	Metagenome	149	N
F051211	Metagenome	144	N
F051214	Metagenome	144	N
F053092	Metagenome	141	N
F067847	Metagenome	125	N
F071328	Metagenome	122	N
F071329	Metagenome	122	N
F072446	Metagenome	121	N
F080166	Metagenome	115	N
F081455	Metagenome	114	N
F081510	Metagenome	114	N
F085820	Metagenome	111	N
F089057	Metagenome	109	N
F092229	Metagenome	107	N
F092232	Metagenome	107	N
F095629	Metagenome	105	N
F095631	Metagenome	105	N
F099453	Metagenome	103	N
F103435	Metagenome	101	N
F105379	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C3092506	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	713
C3109720	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1128
C3119796	All Organisms → Viruses → Predicted Viral	2839
C3121466	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	9653
SRS062878_LANL_scaffold_30250	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	3682
SRS062878_LANL_scaffold_34807	Not Available	615
SRS062878_LANL_scaffold_4254	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1437
SRS062878_LANL_scaffold_4589	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	2049
SRS062878_LANL_scaffold_60627	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	27070
SRS062878_LANL_scaffold_72794	All Organisms → cellular organisms → Bacteria	725
SRS062878_LANL_scaffold_79088	All Organisms → Viruses → Predicted Viral	2097
SRS062878_LANL_scaffold_81081	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	29615
SRS062878_LANL_scaffold_82062	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ8	11234
SRS062878_LANL_scaffold_83407	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	4208
SRS062878_LANL_scaffold_83975	All Organisms → Viruses → Predicted Viral	1324
SRS062878_LANL_scaffold_84172	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	23270
SRS062878_LANL_scaffold_9772	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	769

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3092506	C3092506__gene_122649	F043235	LHQGAVNGDDIVQLRHMDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH
C3109720	C3109720__gene_127162	F040685	MKKLLFKLFFALAFTSISLHGQEKIQQVEVHIFGGMALYSSQYTLNSLKKEFNTKPLMGQKEELPKEISLPNTPKNWEAFTKKINLDKFKKLRDGPSQQAFDGQDEVIIIKTDKKTYRKMNASGNDHDREAWYNLLQIIAKEFGKKSIYE
C3119796	C3119796__gene_129949	F092229	MNEEYRFKHIPEVVLRNVKFIRENNIDIGTGDDVLECMMDINPVLRQRIYDDYDLAKDVAERRFHTTIEELDLTTILQKCTTRPYIAILNNIYFRYFNSKLIEDMFKLGESTKVLDLAIEYECEYYTVNSAKTNIRRYMQQAYFDKYAADADIISSHRVLSDPQVNAVKSAEFTYDLLVAARSENFNPEMVRDIFLKYGLKTNSSRNLYNRMDNNLSLYYYLEDYLEEYVNTGKFTYGSQEYSTIKEFKYLPLMNVLTQLTKSNPSGYILNHKLELVKG
C3121466	C3121466__gene_130636	F081455	METTINKKDLGFINNLIRDCDDYININHRERMAEKLLRVAIEDSDIPPVEEIGMQNIEIVDSATDAIQQPLVNTDSSIAVNFSQMINKPEEVKTEVASVPDNGETKVNVFFPKNEHILGNYVDYDSFNKIKESNTETVVRAVRLLNYKMADQNAAMKFGQFVSEFNPECDPNKRLRYELIRHQGREKDLVVRLSTVVNGTTKYYADIYPDLNKIDIDHHLISSARK
C3121466	C3121466__gene_130637	F080166	MEVTFNNTIKRINTEIKENFHTEYVVGANKLTTNLRYRYRMRLSPRGETVGVIIDWDNYDDLCTIVDEAIDICDPNNKTSPFKRMYSTAGDLLDIKCDSLKVRYLHLDDRFGNRLDLIPFVLIDDHNGTLIEAMKFRFNNDLIFDVPVSRLKGFRRFLMTYNPLLHAGSMARYMAITPLLGNNRQNMMR
C3121466	C3121466__gene_130640	F099453	MLRRKDMNRFDIIELAQETLTFVYNTFNGKVNTLDPYTRLNFVAGYLDTKTNIARTTPYGCIYISLEAFADTVELHGFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYRDEIELQCVKQSCQWILDNIQYIRSLGLVVIPEVYQSRLANLTNVIYTPKYPMAIAMGKLEYMLGKKFREFSNNNIEIEYVDRLKTHYTFMVCENRSYTNSANLNDLGERLLNDKQYTVEYLEYGNSKLVIKITQGV
SRS062878_LANL_scaffold_30250	SRS062878_LANL_scaffold_30250__gene_20896	F072446	MHEFDAQAHKNKFNPPTHPQMKKLVFLLFGLCLYGFTACDSDHEPTKPVRPFHGDTLAQIAWNFPYIVEHHYHSIPGIVPEGTTYRVPVIPRSVEDRTKKEYNEQDVDKVAHLVFRATVHGDTLNRHKKELETLARQLHALILPTIGTSPVLCGVKSIKAVGVAENGRTYDLRREMKLRIRDYKSRRKYNSGRIVTLDCEDTESMTARYVVVLGEIREAELAEHIQPELKFYLPVKRCMDFSSIRFDITLFYGEVLSFQHKLPSKSVLQELPNKSVLENYKQYGFIPESTYFTTLWPVPEKEIER
SRS062878_LANL_scaffold_34807	SRS062878_LANL_scaffold_34807__gene_25116	F085820	TVEPSPRPTWGEIVNPIEAFMYPRDLKVVAAREEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSKLVGNPTEPVVNECHFHRTWLTQGVKAIRVVRTQADGRDEEVTAQCGNLYFYTDKQIFDCQFKCGNRSIFAKPLGETVEADYLWLPGRDVFGLIAPPNPDHLKQRIVLRLADGTEIEKELSKKGKK
SRS062878_LANL_scaffold_4254	SRS062878_LANL_scaffold_4254__gene_1079	F081510	MKFNINAIKSTAKTTWVTTKILGKKYAPVILLGAGLVGYGYSVYEGIKSGKKLEATKAKYEEMETAGEEFSRVDVVKDIAKDVAIPVAVATASTASIILGFAIQTNRLKAVSAALAMVTEEHARYRLRAKTVLDEETFKKIDAPLETKTVEVDGEEIEVESIVPNEGDFYGMWFKKSHKYASDSPEYNEGVIKEADNVLTEKMMRKGMLTFAEVLDILGFEVPKAALPFGWTDTDGFYLEWDAHEVWNDDKQETEIQFYVRWKLPRNLYATTNFHDFIPKKTRKELN
SRS062878_LANL_scaffold_4589	SRS062878_LANL_scaffold_4589__gene_1177	F053092	LVAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEEVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK
SRS062878_LANL_scaffold_60627	SRS062878_LANL_scaffold_60627__gene_54368	F092232	MNTQAKFIADYNDKNRPKFNDKFFTKSDDDIIEDLKDVILSCERNKFYTIKVLGFEVIDDYTEVQKLLIGDETPSISIKDSDLKILKVTYHVACAKDEDTFDVLIAIPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTTAAAAKTQSITLKTNSNAVKMLRNFVDLNTTKEKILRMAMFSVYLFDHKVTLFEYYLARFGWYETLSKFNFEDIIKISDHDIDDPEYYTFAIANSHMKSPFYISAVKTFVDNDRILQSFIASFAKAISLYATKKTTLDQIYTTEFWVCKLGYNFVSSETSVFTKGNAIIESLENSYDIPTKKRLRLPDHIKEDIYSVLKWMACEFSSIRLKNNLDASSKRIRWSEYIAAMYIMLINVKLRRLPEKHDPNMEAYRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGESNSKNVARNVRAIDPSHLGIIDLNTSSASDPGVGGMLCPLNYGVYEWNSFTNEEEPNVWDDNFSKMLNIYREEKGYTSAIMLADDAGLELTDIRDPEAVAFDAHLLGQTIAKVARTRAFEKQLRPALINMEDSCSIYFEEV
SRS062878_LANL_scaffold_72794	SRS062878_LANL_scaffold_72794__gene_70101	F047508	EAIATDAVFVIEFVGEPIHIGMLRHRLVEGRIKYPYLRRIWEYLRHSFDTEDVGWVVKRSELCALMEHIYYLWGDTYALSKALCTVYEAVTNGIDLIEGLYEVLFFENVEDNLYAACVVRNVKVALDLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQRGAATVEDQDFHKVLYYMVRCELILSSP
SRS062878_LANL_scaffold_79088	SRS062878_LANL_scaffold_79088__gene_79448	F067847	MFSHIVRVKGFFDDEPKAKKLYFHLSRREMFDFIKRYDNVTNFQEWMQSAIDAEDLYTLMEFFDDLIGTSYGERQGEHFVKTPQIKESFLNSPEYEKLFDLFMENPGLVKQFYEGILPEKLLKQVKEDGKFAEVEEQIKKAELDSL
SRS062878_LANL_scaffold_81081	SRS062878_LANL_scaffold_81081__gene_82721	F103435	MKFVFCTEPIYQYYRSYLYADDKDKLDKQLMVEYGDYKDMWDLKQQQDALPENIFVAELTARDYPRNPWNYVSQLISKLTYQYLIDSPDFETIFSEVLFNQSEVEFYEFYKAIFRFYNGSEVFIIVSNDEYSDMVTQMMCNVIRRTYGIHPQIIYDMDDVYSIRDDIDFSTQGAQLAYLQRAAYYKLEAKKNFEPLQIWYPFDMNTYTNALE
SRS062878_LANL_scaffold_81081	SRS062878_LANL_scaffold_81081__gene_82729	F089057	MTNIIPLIAKKYNRKGDTSGTLKSLVDDLVFIEDVDDSLLFITNIPRETKYSIEEVFNIISSNDKYSEVLSNVLSSLNIDLDYHKLLLNAIDSESYKIISLISDNIPTPDLFLSKNNYGCLTTALGKSYTIFDKVLGMVISQLLHTSSKEDKILGLFMTICIINKDIDKLASLCTGYLAITKDEVLVKKLMNESATNAFQYMSEEDIHDVVDDINSRSVLARYLSRM
SRS062878_LANL_scaffold_82062	SRS062878_LANL_scaffold_82062__gene_84567	F105379	MVIHFPLSQSDIESLLSISKLLKCDKILYDRNYVNPIIGVGPEKSYFQTTSFMVDLSPHINNLLVNISDLKNLGKITQLEPSKENPEIAIHKPVVSVFNWDAEYVKACMNSLREYQIDDNIIARSDEFHNTEYYNELMAGSASTGACRISVGGYMIDIPKSAMPTLKSDHVVATVYNAPNKDFNVLRFKITKRNGIIVNQSMLFLPY
SRS062878_LANL_scaffold_82062	SRS062878_LANL_scaffold_82062__gene_84573	F095629	MRELIICACLLGCFGVANAAAPVDQPKEVKVIHNDDSVALHKKVYKLEQRIERLEKLLAEKEGK
SRS062878_LANL_scaffold_83407	SRS062878_LANL_scaffold_83407__gene_87346	F071328	MSQKHWTFTHIIRYIEEYERNPLLIERMKWEFILEGEYIVEFVKLCKHLVLERTIDPKKHQAAAICLRYSSQLLLKKRRAIRRLGIEKEYVSAILRQYGIHYREYGDNEHRVFFLDRGINLYFSKHDQSSIYIIQRIEFSNEEYRSFILKVLPVKKSEW
SRS062878_LANL_scaffold_83975	SRS062878_LANL_scaffold_83975__gene_88630	F051214	MPGKIVANDTHLRIDTEFIELKDCFEAFRRGVEYREKNDIDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWL
SRS062878_LANL_scaffold_83975	SRS062878_LANL_scaffold_83975__gene_88631	F071329	MRPLYSKGLLMLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGVAASAIVAREVEKQFDETVKAVKEARDHIEIED
SRS062878_LANL_scaffold_84172	SRS062878_LANL_scaffold_84172__gene_89136	F095631	MASDAVSVNKTLRSYQETVLNTVQNDTLLNANIYDIHQYIENIKKRYVDEDEITLSMGIFGYLGDVNSNALQNAVTMAAEYSNEAIPIKAKFEKNVISHALMLGINKIFAEPATMQAMFVFYEDELVLNTISDTFRFDRDIKIMVGDYEFHLPYDLIIKRIELPTGEYIYTGMYDTTQSNPIITRNSNDVDPYLKPTVRSKIDGRNVVMLLVDLRQYEYMTYHKTIITNNPLESKMLQFEFDNQLAGFDVDVKEYDQPTRKLKPVYNGLNTDGVSKYCNYTYIDSSTIRVMFDNASYLPTANTEVTVNLYTCQGANGNISYKDSIYFRVKSDKMNYDRLNLLVIPTSDSQYGIDKKSIADLKRLIPKEALARGSVTNSTDINNYFNTIDDDDNKLFFFKKMDNPLARLYYAFVLMDSPTNIIPTNTIPIEAIRRDFDNISDSNYILTAGNIIKYDGTTNASIAYQASEDELNAARKNEFLYMNPFMCIVNKKPLYVSYYMNIMDVNKLLEFTYVNQDSKVQFIATKMNWYRHYLSDRDTYFGDISIMQNIQSDIGLVHKDDPYDPEKITGVDVKVLAVFYTDDKYQVPYRWAEAEFVNYDQGTYVMDYKFKLNTNNKIDKNIKLKINNVYEVGNATRLSPGYMANNMHMKIFVFAKDVFGYNAGLHKSDHIFTADFLEGYSLTNEYTVKYGIDFLYNYSDLIESHIKVKKQDNGQISYIIDRVPVISYDYVNTEERIQDFINNLEKKRIHILDCLDVLEDSFGIDIKFFNTYGPSKLFYVNDGVPLNRVNLSMTFKVKFLTTTDKYLSEYIKNDIRKYIEDKSRISDIHIPNIITYITQKYAENVTYFEFLDFNGYGPGYQHIYRKDESIVGRIPEFLNINTIGTENNALDINIIIA
SRS062878_LANL_scaffold_9772	SRS062878_LANL_scaffold_9772__gene_2860	F051211	CVLLKQELQHIGITSQLLIGVFDWQDLQIPEHILKTRRQQYERHVILRVFIDEFAYDVDPSIDIGLTPMLPMTCWDGKSSTTTMAPLRYLRVYRPHSLHERILSQLRRKIFRSNPESFYTAIDIWLATIRVS