7000000317: Human stool microbial communities from NIH, USA - visit 1, subject 763577454

Overview

Basic Information

• IMG/M Taxon OID: 7000000317
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052843 | Ga0030479
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 763577454
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 191215504
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032286	Metagenome / Metatranscriptome	180	Y
F039198	Metagenome	164	Y
F055775	Metagenome	138	N
F068811	Metagenome	124	N
F074899	Metagenome / Metatranscriptome	119	N
F076189	Metagenome	118	N
F078004	Metagenome	117	N
F088914	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2575372	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	664
C2702049	Not Available	25677
SRS014459_WUGC_scaffold_24296	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1306
SRS014459_WUGC_scaffold_49052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1141
SRS014459_WUGC_scaffold_67346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	587
SRS014459_WUGC_scaffold_67518	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	914
SRS014459_WUGC_scaffold_75019	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1669

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2575372	C2575372__gene_247613	F039198	MQITSYEVTNTKYIQIYLTKEELEKQETKELINKYKQEKYSVAIFVSGKENYPEILEKIITKQVELNKNVC
C2702049	C2702049__gene_286568	F055775	MTQIAQQDNLVIEVTTTAAALDGDTKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINANSGAVEVIALN
SRS014459_WUGC_scaffold_24296	SRS014459_WUGC_scaffold_24296__gene_31574	F068811	MDQDGSEHNICSNREGLCPGKEQHGASGWKKIFQHGKEPLRSKDSVSQYCNKKVAVLLILNENVSETLCIFSIDKTNCCRIK
SRS014459_WUGC_scaffold_49052	SRS014459_WUGC_scaffold_49052__gene_71488	F076189	VLSAGHCFFLFPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLHAIQSAQKQLRMLCNFHENTFWLLIFYANYAIL
SRS014459_WUGC_scaffold_501	SRS014459_WUGC_scaffold_501__gene_226	F078004	LPPNPITCFIIRILQGFVKPDLMVLFPVCFLFFCKSSTGRLSAVAGSATLDIHMIRHALVIAVINTFYRLTVDADRMAWMRQGIAERFSSLSLLRKALTAGAVTVTGVLAAHHDVSLAAQTVLIIGTIFHNAF
SRS014459_WUGC_scaffold_67346	SRS014459_WUGC_scaffold_67346__gene_104930	F032286	FNTRLFAGTAADDALVTGSTLSFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADYRTEQKTISPFSLALILTFDFAALSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNADFHAHGQDRERAEI
SRS014459_WUGC_scaffold_67518	SRS014459_WUGC_scaffold_67518__gene_105264	F088914	AVGRILPVYSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENRKNSGKFIVFSAWYAAKALEMDVK
SRS014459_WUGC_scaffold_75019	SRS014459_WUGC_scaffold_75019__gene_119350	F074899	VHFLGYSLEMRGRKQWSKQAATSSFLDKKTPQSLIQQGLEGSTVVGKDEVGSSNLPSSSKMC