Sample 7000000315

Basic Information
IMG/M Taxon OID	7000000315 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052841 \| Ga0031009
Sample Name	Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159268001
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

7000000315 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0063646 | Gp0052841 | Ga0031009

Sample Name

Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159268001

Sequencing Status

Permanent Draft

Sequencing Center

Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	145951833
Sequencing Scaffolds	20
Novel Protein Genes	23
Associated Families	21

Dataset Contents

Total Genome Size

145951833

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales

All Organisms → cellular organisms → Bacteria

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis

Not Available

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Ecosystem Assignment (GOLD)

Name

Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Type

Host-Associated

Taxonomy

Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Maryland: Natonal Institute of Health

Coordinates

Lat. (^o)

39.0042816

Long. (^o)

-77.1012173

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F022002	Metagenome	216	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F040149	Metagenome	162	N
F043235	Metagenome	156	N
F045567	Metagenome	152	N
F046431	Metagenome	151	Y
F047127	Metagenome	150	N
F047508	Metagenome	149	N
F049707	Metagenome	146	N
F051213	Metagenome	144	N
F055792	Metagenome	138	N
F063778	Metagenome	129	Y
F071329	Metagenome	122	N
F076191	Metagenome	118	N
F077403	Metagenome	117	N
F092231	Metagenome	107	Y
F095631	Metagenome	105	N
F101360	Metagenome	102	N
F103434	Metagenome	101	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
C3440345	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	770	Open in IMG/M
SRS013723_Baylor_scaffold_16363	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	4098	Open in IMG/M
SRS013723_Baylor_scaffold_20233	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	19262	Open in IMG/M
SRS013723_Baylor_scaffold_28754	All Organisms → cellular organisms → Bacteria	20755	Open in IMG/M
SRS013723_Baylor_scaffold_28891	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	10170	Open in IMG/M
SRS013723_Baylor_scaffold_40179	All Organisms → Viruses → Predicted Viral	2856	Open in IMG/M
SRS013723_Baylor_scaffold_43264	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	3291	Open in IMG/M
SRS013723_Baylor_scaffold_43602	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	47329	Open in IMG/M
SRS013723_Baylor_scaffold_51292	All Organisms → cellular organisms → Bacteria	43101	Open in IMG/M
SRS013723_Baylor_scaffold_62481	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1258	Open in IMG/M
SRS013723_Baylor_scaffold_66887	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	10784	Open in IMG/M
SRS013723_Baylor_scaffold_67533	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	8602	Open in IMG/M
SRS013723_Baylor_scaffold_69170	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	7695	Open in IMG/M
SRS013723_Baylor_scaffold_70411	Not Available	2367	Open in IMG/M
SRS013723_Baylor_scaffold_76113	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2056	Open in IMG/M
SRS013723_Baylor_scaffold_86187	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	26261	Open in IMG/M
SRS013723_Baylor_scaffold_89633	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	804	Open in IMG/M
SRS013723_Baylor_scaffold_92203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	3039	Open in IMG/M
SRS013723_Baylor_scaffold_9327	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	71021	Open in IMG/M
SRS013723_Baylor_scaffold_95122	Not Available	886	Open in IMG/M

Sequences

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

7000000315: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159268001

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3440345	C3440345__gene_232645	F051213	MNLYKILGALILALSFVFTSCDWVSNEPTIEGDHFKYFDSSAQRKSFRVVNASGKRYNHKVDWDIIGITQLDSDTFFTKKVDTLSNGDLKISYDWVSFTVKERKSVIEVEVQKNETGQARSVFFVTSNSRYQAHLPDIVLRQRAK
SRS013723_Baylor_scaffold_16363	SRS013723_Baylor_scaffold_16363__gene_19087	F027205	VASRLIVSADDILKAVKESEEFERKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSTN
SRS013723_Baylor_scaffold_16363	SRS013723_Baylor_scaffold_16363__gene_19088	F036281	LITLIKVDEGPVDIYELRMQYLAKLKETDGVMFPTFIYRNKDLFVTEFKPTCDDQWIMYMTNVEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWSAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERERDHWYTFRMSDAQKSKFTRHTMTNEKGHQTYDWVLENVEWAADTIRYF
SRS013723_Baylor_scaffold_20233	SRS013723_Baylor_scaffold_20233__gene_23697	F045567	MVTEDVVHTSTHRVEDALLAVDGDILTPRDGTYIVQTERVVVVLVSQEDRIDTIDTETCGLVVEVRATVDEDTLPALGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEKPRLTEREGAW
SRS013723_Baylor_scaffold_28754	SRS013723_Baylor_scaffold_28754__gene_33984	F103434	MVTFRPRRGRYLENGPHAVEVTVAIVSEGRTGRRYTPGETFYVDKVLVQPSAGNALKATENRVIRGDLTDETTLKIMGTGRKWPGGPHSWVKIIKGPPSLEGKTFQQAGEPLTYDASPMTRHFSVRCDTLGTVAK
SRS013723_Baylor_scaffold_28891	SRS013723_Baylor_scaffold_28891__gene_34149	F095631	MASDAVSANTVARSYSDTVINTVKNDTMLNANIYDINQYIENIKKKYISEDDLTLSMGIFGYLGDVNSNALQNAVSMAAEYSNEAIPIKAKFEKNVISHALSLGINKIYAEPSTMSAMLIFYENELILNTVNDTFRLDREVKIMVGDYEFHIPYDLIIKRILLPTGDYVYTGMYDTTQVNPIITRNSKDVDPYLKPTIKSEIDGQPVIMCLVELRQYEFSTIHKTIVTSNPLESKMMQFEFDNQLAGFDVDVKEYGNPIRKLKPVYNGLNTDGVNDFCNYTFIDSSTIRIMFDNASYLPTANTEVTVNLYTSQGSKGNIKYKDTIYFRVNSSNINYDRLNLLVVPTGEAQYGLDKKSISDLKKLIPKEALARGSVTNSTDINNYFNTIADEDNKIFFFKKMDNPLSRLYYAFLLMDTTTNIIPTNTIPVECIRRDFDNISDSNYILTAGNSIKYDGKTNASVVYNASKDELKKISNESFLYMNPFMCIINKKPLYVSYYLNIMDVSKILEFTYVNQDSKVQFITNNMNWKRSYLTKRDTYVCDISILQNIQSNIGIIHRDDPYDPNKITGADLKVIAVFYSDDKYQVPYRWAEAKFVNYDESSYSFDYRFELNTDNKIDKNVRLKVNDVHEMKATADKFEPGYMLNNMPMKIFVYCKNVFEYDAGRNKTEQYFADGFLDGYSLTNEYTVKYGIDFLYNYSDLIESVIKIKKQDNGQISYYIDRVPVIGYDYVNTEDKIQSFINELEKKRIHILDCLEVLEDSFGIDIKFFNTYGPSKIFYIENSVPINRVNLSLKFKIKLLTASDKYIIDYIKNDIRKYIEDKSKITDVHIPNIITYITQKYADSITYFEFLDFNGYGPGYQHIYRKDESIVGKIPEFLNINSTNTEDNKLDISIIIA
SRS013723_Baylor_scaffold_40179	SRS013723_Baylor_scaffold_40179__gene_48518	F018385	MAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTLTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLYYEEVK
SRS013723_Baylor_scaffold_40179	SRS013723_Baylor_scaffold_40179__gene_48519	F071329	MRPLYSKGNLMLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGVAASAIVAREVEKQFDETVKAVKEARDHIEIED
SRS013723_Baylor_scaffold_43264	SRS013723_Baylor_scaffold_43264__gene_52407	F063778	LMPETISEEAKQELLRQLQDALKITEKAKTSINDVAAITHSAADGHQLTEVMLQEITTAREYLKSCADQIEYAVNSIEAIPLDPPPDD
SRS013723_Baylor_scaffold_43602	SRS013723_Baylor_scaffold_43602__gene_52929	F076191	MLMKIIAENPAEEALLWRIKALSNELVNQDNRCTSMPVWTILDNNKAGKDYGAVMYFTGKAAEQHINENDHHYENPTTCIRSAHDNRELKDVIHLLILAGGNEIPSNHYGVLRDA
SRS013723_Baylor_scaffold_51292	SRS013723_Baylor_scaffold_51292__gene_62910	F049707	VVSEYRSPHNDGHDPYILIWEYGNDAKRAEFSERWATFGEDGWTIWHFRLVDGGIMTFSSREWDQRDDVNHLTTIHFQPKIQNNERN
SRS013723_Baylor_scaffold_62481	SRS013723_Baylor_scaffold_62481__gene_78037	F047127	MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDTNYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDRMVGDRDIREILEKYNSK
SRS013723_Baylor_scaffold_66887	SRS013723_Baylor_scaffold_66887__gene_84179	F043235	MDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIYRIDTIPKKVWEFMEVTREIVDSLIQVSGAAILVKEVKDGMYMPYHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRCMASNVLLPGSAH
SRS013723_Baylor_scaffold_67533	SRS013723_Baylor_scaffold_67533__gene_85068	F077403	MCTVYAEGRISVHFEVRWHRERNPMDTLRRELNVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTMIEGYPRRERISDTHYVPKWSTNALRFYEERVRRHITHQVLVWDQAWVVDLEPSIVDGLPKPRLDYQYPHANWSECAYYLQGHLYYLLTPQRGHDWFQVSFLPDHAAHSVATEAVVTEGELHPYVHRLAFLPARSRREYVYSLLAFRLIRGRWYFMLPDWQASAQLRDEGTSLNVYLLRDQEAPTSPQGYALPDRYEGYQLYQGQVRGDSIWIEM
SRS013723_Baylor_scaffold_69170	SRS013723_Baylor_scaffold_69170__gene_87322	F101360	VSKEDALRRAVIAAHVAKVASQEKKKALQELEEVMAPGDSSKPSIDGRQIGTVTVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVAATSLGGFIKQTGEIPDGVELVMPAPRISARVSTAQEEVIRELITTGDIGLTEIENPE
SRS013723_Baylor_scaffold_70411	SRS013723_Baylor_scaffold_70411__gene_89035	F077403	MSAIYAEERISVHFEVRWHRERNPMDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEAIPRTEELSLTHYVPRWATFMLHVRGAELQKRKVLTRQVLLQDQAWEVELEPSILDGKPKPRITYEEGISNWSERAYYLQGYLYYLMNPQQAHDWYQVSYLPDHATHSVATEAVVTEGELHPYVHRLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWQASERLRDEDTSLNVYLLRDQEAPTSPQGYALPDHYEGYQLYQGLVRGDSIWIEM
SRS013723_Baylor_scaffold_76113	SRS013723_Baylor_scaffold_76113__gene_97074	F046431	GISMLKKVIQKGVKVIVVMTMVLSMIIAYSNTMISNAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGASTFETIGLTDFNNLEEEVKVLNVYPVPTAVYNTPNVQVTYLDGSSEVIPKTALLKVWMEGRNSKRRWKYNQF
SRS013723_Baylor_scaffold_86187	SRS013723_Baylor_scaffold_86187__gene_112510	F055792	MEIASQALDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALKRDLAIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLKTLQKEGYILFEGSMLPCEARRVDSRSSVKSLDLEPRIIGKTMKPVALPHVARLDEGIPLQRIGGLRDLLVTPDVSQADDLQTSREEGTDLLQLMGIIARKYQLFHTFVIISSASLRA
SRS013723_Baylor_scaffold_86187	SRS013723_Baylor_scaffold_86187__gene_112511	F040149	VADEGAKELRWEVLIEEQGIPVLFIEVEAWYDRWVSSSEILGSVGIALEREPRLAPIWSHDSEDAIDYFIYDVLVPEGHALTAVRERETVVVQLLNIHRMF
SRS013723_Baylor_scaffold_89633	SRS013723_Baylor_scaffold_89633__gene_118325	F018385	MMADLINSWLPYQELSLEKDRDPATDDEIIYGNHVKHFTLTVYSPEGRVNKYWNVRILKDQVGYCRVACPREGKILCFNWLNWTAYMFSHDGMNELVFMPDSRRRTVSQLSFDN
SRS013723_Baylor_scaffold_92203	SRS013723_Baylor_scaffold_92203__gene_122769	F092231	MIIFLPQDFITWANALMQFPWPIQLNNFPPYAERLGWKPTSLPDEFSVCPDNDDEITILSSDREGNVRNLFLPMASDETEDAEGAAELNDHFVSCVAAGRKAWGEPFLLEAGDGPSVTWRFPGDMFAQVTSGRWSVLFNFFTPEGRRQFL
SRS013723_Baylor_scaffold_9327	SRS013723_Baylor_scaffold_9327__gene_10664	F047508	MLGHSLVEGRVKYPYLRDIGEYLRHSFDTEDVGWVVKRSKLCAFMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYASCVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP
SRS013723_Baylor_scaffold_95122	SRS013723_Baylor_scaffold_95122__gene_128173	F022002	MSSRLALTLGLLLALLLSLPSYAQDGQSKEPINRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARRPTLSVRLYFYKGHLRSISFTFGDLKIFEQIESGLENKYGTMAEGKATSKIRVKGIADAFTSLEVVVHSFEYDGHVGFAYAYISYTDLELDRAYSAENE