7000000312: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763961826

Overview

Basic Information

• IMG/M Taxon OID: 7000000312
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052838 | Ga0031242
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763961826
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 81777010
• Sequencing Scaffolds: 12
• Novel Protein Genes: 13
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → environmental samples → Bacteroides sp. CAG:144	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella parvula	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032313	Metagenome	180	N
F043990	Metagenome	155	N
F046432	Metagenome	151	Y
F054110	Metagenome	140	N
F066860	Metagenome	126	N
F071327	Metagenome	122	N
F080164	Metagenome	115	N
F089056	Metagenome	109	N
F092230	Metagenome	107	N
F103432	Metagenome	101	N
F103433	Metagenome	101	N
F103436	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C3247877	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	577
C3259616	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris	654
C3286262	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1012
C3301627	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1604
C3312184	All Organisms → cellular organisms → Bacteria → Proteobacteria	3154
SRS014684_WUGC_scaffold_14687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	635
SRS014684_WUGC_scaffold_17068	Not Available	1182
SRS014684_WUGC_scaffold_22460	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → environmental samples → Bacteroides sp. CAG:144	2273
SRS014684_WUGC_scaffold_37229	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1546
SRS014684_WUGC_scaffold_42362	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2579
SRS014684_WUGC_scaffold_43196	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella parvula	14500
SRS014684_WUGC_scaffold_43472	Not Available	1907

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3247877	C3247877__gene_96607	F071327	MEDLFNSVYSTHKGISFSTVVVFGAFIFLLLQVHLSYKGRISDVLRKTSFFSMILLYIQGILGVFLGIYSPEFSEASGFSSYFKLFEYGIIILACAGMITYVYMFLKNNQILTLKVLIIALAAALLFEYAYPWRIIFG
C3259616	C3259616__gene_101828	F089056	SKFSPLIIRKMNVFCRIILPLLCIISCSKRKEADNTMVLEKNHTFFLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPNRRFKDKEVIVFMYYINSCCDNGQLLEECDVSFISITFTNKNKILFGKGIQ
C3286262	C3286262__gene_115271	F043990	MIKKLGIIFTFGVIILGIAVYANHKIESSAIEREFGVNMSNMNIDEKYRKEEWALNGDGEKTIILTYDQLDSSFTKLNKLPIKEDLPPNGIPKQFLNTTNGYYKYVVDENDDRDFGILIVDTTRKEICIYYQIL
C3301627	C3301627__gene_125148	F103436	LLIILQVVEMIITSKDGWCDKSDAEILNSLRDWVLKCDLKYSKREALKKIDSAFALWGNAEYVAAVHLLDENEVYFSKEDWPYYALGIEILKARKYTYFY
C3312184	C3312184__gene_134552	F103433	MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWSGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARAIAGLSPDDASKIPAYIKRASIFLAVLTAFLLALVVQKIRALFGGITASVFVVMLSFSPWIAGYARNIYWIEPMLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELIHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAASAINARASDRGISGIRSMRAYAVGNFKILRPESYNFINKIVNLDNMANNGGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFVQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSVIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYILIGLWADYVVKRTVKYE
SRS014684_WUGC_scaffold_14687	SRS014684_WUGC_scaffold_14687__gene_13325	F092230	LFIVCIILVAFFRQIGCGSEGEYAFQISEWGAKLKNIYGTDFINKEIIVRDNIVRVDGIRCLYAVNQNEDGLSIYLLLPEGTYLTHNYVGSSFVRFSNSSEYINMAYGEGSVEVSDSTSTGEVQSTEEKEARDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILIVIAMTIGYYSYLKPETVYEFYCKLRRKEKYPSDVNLVKRIG
SRS014684_WUGC_scaffold_17068	SRS014684_WUGC_scaffold_17068__gene_15482	F032313	LLFALTLMACDNDTPQEKPREQEKHEVPVPVPKPQFDEVGERIWYGRTPAMRLDSTDYGAGLISVFGMLTSKIPKQRFDSLFKQTVWEVKDIRVVETDLSLAKKNPGILGWVTTTEFTCRNGVILLHWQGIDVNHVDTVNYVYDEVDNEIVLEGTGIRWSVLRLNKNAVEFLQRGRTMWGPFDWYYGRNSGRSEVTLEAK
SRS014684_WUGC_scaffold_22460	SRS014684_WUGC_scaffold_22460__gene_20535	F032313	MYRFLILIFALTLMACDNNTPQEKPHEQEKHEVPVPKPKPQFDEVGERIWYGRTPAMRLDSTDYGAGLIWVLEMRTSSIPKQRFDSLFKQTVWEIKDICAVETDLSLAKKIPRFVGGSIAKEFTCRNGVILRHMQGIDINCVDTVNYVYNEDLNEIVLEGTGIRWYVLRLNKNAVEFLQQGHNIWGPFDWYYGRNSGRSEVTLEEK
SRS014684_WUGC_scaffold_37229	SRS014684_WUGC_scaffold_37229__gene_35810	F066860	MTTKKQKLQKQQAIDTWIVIALWVSAIWFSLARGFITGIGGWVLALLAPWALIVSCICLAIISRQMKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFETSKTIAIISGFVVVLSLFVAVTFGIAEDRE
SRS014684_WUGC_scaffold_42362	SRS014684_WUGC_scaffold_42362__gene_44653	F046432	MWEMTESKLSNIISKYQLPMDDYLVEIDGAFGRGEFFWVIKNQSTNIKYLLVNTYSHHGIESELECYREGGFDNLEAIPRKIETLENASDADNEIFKYLFGLYSIFEMKS
SRS014684_WUGC_scaffold_43196	SRS014684_WUGC_scaffold_43196__gene_46527	F054110	KALQMNGRRYVVDTRQSWSKFDKPCKVYIVSRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVKTYKGGD
SRS014684_WUGC_scaffold_43472	SRS014684_WUGC_scaffold_43472__gene_47319	F080164	MVGLTLCAAPQVTLRERANAFPLITEKDESEIDAPYAWRLPVVPLSLDNREIRNFAKYPLLPSLSGGKLTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGFGVRTAPKLFGIKSMHVYGVQKDGSRQAVDKQVTLHLPGFEKAEKPILYKGQEGRLVLCEYYESHRGDLFLDVANAHPEIFGELRPVVDFHFSVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPDRP
SRS014684_WUGC_scaffold_43472	SRS014684_WUGC_scaffold_43472__gene_47320	F103432	MKLIHSLFSLPLLLVLGGFLCFTACQDDAEPARAAWLISTDSLIHAAEVYDGKAFEHVVSTTATGLRVSEPRRVVPMLPRQLHVEMEGKTLFRRHNLPSVSAYSLRVVAVGDTIYRQKESDAQFNADLDALFHESIGIAPRLFGVRELSVLGIDRKGKPRDLGNYSCPLLQGKRKNVNYRTREGVFHEHYEAASVDTFSVKSNWLLKTKAEPSLYAPSFRLLVWDQPAEGCTKLRFTLTLVDGRSLVAEVPLY