7000000308: Human stool microbial communities from NIH, USA - visit 2, subject 160158126

Overview

Basic Information

• IMG/M Taxon OID: 7000000308
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052834 | Ga0030568
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 160158126
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 127086137
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051934	Metagenome	143	N
F056623	Metagenome	137	N
F068855	Metagenome	124	N
F070133	Metagenome	123	N
F072366	Metagenome	121	N
F087213	Metagenome	110	N
F087336	Metagenome	110	N
F102166	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1655009	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	808
C1671649	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	997
C1679044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1115
C1679392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1121
C1714840	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3186
SRS058770_LANL_scaffold_16281	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	4167
SRS058770_LANL_scaffold_36139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1133
SRS058770_LANL_scaffold_38450	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1652

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1655009	C1655009__gene_159010	F087213	MKHSIARFSCLALIFVLLLGLCCVATAESTDAVSGAPLDNDIEIVYKEHFDDMVTRYADELTEAELLVSADVYDAIGMIRFDSEDSLAARQRIYGIASADDLHAILTGYFDPNDAAYTADAALDARLQAILAACGLNPEDYDISVIRNLSGLPEPITGTNWYCTLIRKGVEVAEDETNPYDMVIVLYGDEMTVGAFVLNPEV
C1671649	C1671649__gene_164418	F087336	MHCLLRGMVAELEQVPKAFRAAVNQRRAAVKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLVEQRQVAFLGIAFQILPL
C1679044	C1679044__gene_166759	F102166	MEETWRISPEMRVFLMKKLFSLLLVLALALMPTLSLADDDAACQNLYNMLLDELKSVDLEMTADEESYRIYLGYALDKNSLGDADVIFDAYSDAVTINVSYSNPLDEALVPQVISFFNRVNSTLYVGKLMVIKSDNVWYAAYEIFLSVDPENITDWDRNNVLAYTSLALNTLEEMVDYITEIANGESADNVFAMWQ
C1679392	C1679392__gene_166865	F051934	RLSADIDPVQYPAQERKLAQGLKSLFRLLTVEGDVVVSDGSFDARIDLGLTNAPEKTATRIRFFGLDSHWGIQATDLGGETLMVNQLAWLEFAIKAYNHLDLPLQRVFLWLSPYAHTSAWAGVRQAIADLAAQENDGRLENTALIACAEEIARLSEDDRALYYYIEAFGLESGTDADIFDALATLPEYVEANFPDGLSIEHTENGVSWQNGEETVFSYAEADGTQVVSLHFPDLVDFSATLRRDALLFTGALSLQSDVLNAQVSFSLPVSYPVTLPFYAQIDADGMIAGDDGIHLAFEGEARGDTITIRRIQPDHSATMMTLTVKVIQVAEGTVKYSPEDVQGTNVLSVDGPALAELMGRIGKPMVRKVTQWL
C1714840	C1714840__gene_177359	F070133	MKEEKRMKRLLGLLLAMMVMMGGMAGAQASTDNASMQLIRMNPLAFRKEPVGLYSVTHTPNGSFVVIYFAEGEKTELQEMWMELFDSVGTSLLSAKLGEFDPNGEKIPHGQIILKKDRFICEYYPDITSMEVCTQTVYRYTGKRIQKPTIKKLKFGAAPYAQHVGDYMVEKQAHSEDETPFRTVKITHIASGKSKKLMIYDWSFCACSDQDGNLLIAQQNEKGNLEIRSYNAAMQESIVELSGDFLQNENVRDAACIGQTAYMRIRLTNEKSEILLYDITQQKITDSQTLLAVDDNSYIAEIKAAGAVLLSVDGYWNRELQRQKYQINLLNEHFETSRLPLQHESCLYIFTDVEQADITTIEMDEKSHSYFVCSYSISAGE
SRS058770_LANL_scaffold_16281	SRS058770_LANL_scaffold_16281__gene_35504	F068855	VEAQGPQVRKSLAPQGLQDEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAVW
SRS058770_LANL_scaffold_36139	SRS058770_LANL_scaffold_36139__gene_81702	F056623	MTLVRAEIPATQKRDWKPLILPLAAAVLNLGALALWLTLPSCVTPENSGWMGRFALCIVAQSVSLCAAIGSIVSAMRRKPPKPVAVADEPELRRRLVEAEGRIALDAQTIEALFAQESVTIISTGAETAAELYASLYEMAQDARLDGDANQEKALSWPLSNAKRLLNAVACEAVDYTPETAMFYDVMDADITQQRRPAIVQKADGIVQQRGLYLRKG
SRS058770_LANL_scaffold_38450	SRS058770_LANL_scaffold_38450__gene_88790	F072366	VLALQQMVDYVEYVDDLTVLGEPWEAENEYDLYQDFLLDVISWGLQKYRAKKRFLWQICYYVNAWATFYYIFGREITQDNVEQWTKTLFEEAKERYPDSMLFEFIPHAAQLDYVWFYRLTDEKRLQIRLEVGEWNLQKNDMDQAVQSDFDDAMTWYRDNGRKLLEAKNKTNN