7000000296: Human stool microbial communities from NIH, USA - visit 2, subject 159247771

Overview

Basic Information

• IMG/M Taxon OID: 7000000296
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052819 | Ga0030557
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 159247771
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 82506363
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044554	Metagenome	154	N
F088914	Metagenome	109	N
F088921	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1762327	Not Available	589
C1792049	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	998
C1812629	Not Available	1866

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1762327	C1762327__gene_73509	F088914	VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENIKNPGKFIVFSAWYAAKA
C1792049	C1792049__gene_86016	F088921	LGATIRLYKIGAEKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKNQNMQEEKKEKYINGEIYGEKNQIIVANKSAMIRDKSRSK
C1812629	C1812629__gene_97000	F044554	CCAAGGGSVSWRSASPCIFFHTQAYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFPFSFRANFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL