7000000290: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 246515023

Overview

Basic Information

• IMG/M Taxon OID: 7000000290
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052813 | Ga0031077
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 246515023
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 50543409
• Sequencing Scaffolds: 11
• Novel Protein Genes: 15
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
Not Available	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctYBm1	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	1
All Organisms → Viruses	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F051214	Metagenome	144	N
F063778	Metagenome	129	Y
F071329	Metagenome	122	N
F074985	Metagenome	119	N
F081456	Metagenome	114	N
F081510	Metagenome	114	N
F095631	Metagenome	105	N
F101360	Metagenome	102	N
F105377	Metagenome	100	Y
F105378	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C3470505	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	699
C3479029	Not Available	844
C3489798	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1293
C3492920	All Organisms → Viruses → Predicted Viral	1680
C3495777	All Organisms → cellular organisms → Bacteria	2917
C3496075	All Organisms → Viruses → Predicted Viral	3289
SRS023358_LANL_scaffold_13606	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctYBm1	8360
SRS023358_LANL_scaffold_21784	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	3262
SRS023358_LANL_scaffold_31496	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	4503
SRS023358_LANL_scaffold_46801	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	6953
SRS023358_LANL_scaffold_6261	All Organisms → Viruses	3334

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3470505	C3470505__gene_94503	F018385	MADMINSWLPYQELSIDKDRDPVTDDEIIYGSNVKHFTLTVYSPEGRVNKYWNARILKDQVGYCRVACPREKKILCFNWVNWTAYMFSHDGLNELVFMPDARRRTVSQLSFDHVPMKEAK
C3479029	C3479029__gene_98580	F105378	MNINVYVDNIKKWVQISSDEVLDRNKNLSDLKDKNAAIINLGLYDKFISKEALESGFLPDIFTPENIVTDSNHQFVTDAEKNKWNNKLNKPIANQDHLEENQIGYDELNEKFYIGLNNKNVLIGGASALDNIKVVNGFFSGNSQATVIRNTKQNQNGEFIRPIFVDVQCTEYTGGDLGEISVTYTAEAINVYNTGSFT
C3489798	C3489798__gene_104426	F101360	VSKENALRRAAIAAHIAKVASQEKKKALKELEEYMAPGDTSKPQIDGLQVGTVSVSAPQPRYQVVDEKALVAWLECNKPDAVHKVPAPWFVATAALDGFIKQTGEVPDGVEVVQGDPRISVRTSTAQEEAIRELISTGDISILEIECGDA
C3492920	C3492920__gene_106337	F043991	VSKKNPSIIDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNVKPSWVGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA
C3492920	C3492920__gene_106338	F051214	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDGFVVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWI
C3492920	C3492920__gene_106339	F071329	RPLYSKGNLMLPVAKIIISGLSSIGAGMIASKLTKPLVSNANGIAKILLWFGSVGTGVAASAIVAREVEKQFDETVKAVKEARDHIEIED
C3495777	C3495777__gene_108563	F081456	VFEEPPIYYILISLIFLIVFGAVAFATWLVWLTPISFMAKLVMTAIGFLLCAITVILYTISAE
C3496075	C3496075__gene_108866	F027205	PPFIERTHVASRLIVSADDILKAVKESEEFERKALKEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFVVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIRK
C3496075	C3496075__gene_108867	F036281	MFSLIRVSEGPVDIHELRTRYLGKLKTEEGVMLPTFIYRNKGLFITEFKPTCNDQWIMYMTNAEGLIAKMRIKNGDLMSNGSVLFLAEERKTYTAKEYYDYWTAREGRPAPFFYEARQYHVKSFMRVPDSTDLWITAERETGHWYTFRMSDAQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF
C3496075	C3496075__gene_108868	F074985	MMELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYQRLYEVDTESAVLFTINTYPKESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFNLEQFDQLWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFLYNPISGSWSLDDPTQEIKDLEEIKQALRADAILDVTVSGVPMRLIRVQEIAKGVLFFVFQDEEKNKRYYHNRPAIKLRIVTDSETGEQKYLLDHIKAMHID
SRS023358_LANL_scaffold_13606	SRS023358_LANL_scaffold_13606__gene_5570	F081510	MKLPKLPNIQTIKSTAKSAMVTTKILGKKYAPVVLLGVGLVGYGYSVYAGIKSGKKLEATKSKYEAKDAAGEEYTRFEVVKDVAKDVAVPVAVATASTAAIVLGFAIQTNRLKAVSAALAMVTEEHARYRLRAKEVLDEATFKKIDAPMETKTVELDGKEVEVESIVPNEGDFYGQWFKYSSNYASDNPDYNESYIKEADKYLTDRMMKKGVLTFGEVLEELGFDVPRAALPFGWTDTDSFYIEWDAHEVFDEEKQEYDLQFYVRWKTPRNLYATTSIKDFVPKKTRKELN
SRS023358_LANL_scaffold_21784	SRS023358_LANL_scaffold_21784__gene_11218	F063778	MPETISEEAKQKLLQQLQDALGLVKSADTSAHDVAAITHSAADGHQLTEVMLQELTTAREYLKSCADQIEYAISSIEAIPLDPPPDD
SRS023358_LANL_scaffold_31496	SRS023358_LANL_scaffold_31496__gene_19932	F101360	VSKKSAARRAAIAAHIAKVASQEKKKALKELEEYMEPGDTTKPQVDGLQVGTVSVSAPQPRYQVVDEKALVTWLEWNKPDAVHKVPAPWFTAAAALDGFIKQTGEVPDGVEVVQGDPRISVRISSTQEEAIRDLISTGDISLLTLEGGDA
SRS023358_LANL_scaffold_46801	SRS023358_LANL_scaffold_46801__gene_40654	F095631	MASDAVSANTVARSYSDTVINTVKNDTMLNANIYDINQYIENIKKKYISEDDLTLSMGIFGYLGDVNSNALQNAVSMAAEYSNEAIPIKAKFEKNVISHALSLGINKIYAEPSTMNAMLIFYENELILNTVNDTFRLDREVKIMVGDYEFHIPYDLIIKRILLPTGDYVYTGMYDTTQVNPIITRNSKDVDPYLKPTIKSEIDGQPVIMCLVELRQYEFSTIHKTIVTSNPLESKMMQFEFDNQLAGFDVDVKEYGNPVRKLKPVYNGLNTDGVNDFYNYTFIDSSTIRIMFDNASYLPTANTEVTVNLYTSQGSKGNIKYKDTIYFRVNSSNINYDRLNLLVVPTGEAQYGLDKKSISDLKKLIPKEALARGSVTNSTDINNYFNTIADEDNKIFFFKKMDNPLSRLYYAFLLMDTTTNIIPTNTIPVECIRRDFDNISDSNYILTAGNSIKYDGKTNASVVYNASKDELKKISNESFLYMNPFMCIINKKPLYVSYYLNIMDVSKILEFTYVNQDSKVQFITNNMNWKRSYLTKRDTYVCDISILQNIQSNIGIIHRDDPYDPNKITGADLKVIAVFYSDDKYQVPYRWAEAKFVNYDESSYSFDYRFELNTDNKIDKNVRLKVNDVHEMKAAADKFEPGYMLNNMPMKIFVYCKNVFEYDAGRNKTEQYFADGFLNGYSLTNEYTVKYGIDFLYNYSDLIESVIKIKKQDNGQISYYIDRVPVIGYDYVNTEDKIQSFINELEKKRIHILDCLEVLEDSFGIDIKFFNTYGPSKIFYIENSVPINRVNLSLKFKIKLLTASDKYIIDYIKNDIRKYIEDKSKITDVHIPNIITYITQKYADSITYFEFLDFNGYGPGYQHIYRKDESIVGKIPEFLNINSTNTEDNKLDISIIIA
SRS023358_LANL_scaffold_6261	SRS023358_LANL_scaffold_6261__gene_1579	F105377	VRDFDRLPLLTPEEASERAWEEGGPAHPVFDRGYRVQGLDAWKAIETLLQQNDVRDITVASFGLRRFEEILDALAMLHERGWRLWQTSANVYVDGEKRPVQAIRAHYHGD