7000000283: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 158458797

Overview

Basic Information

• IMG/M Taxon OID: 7000000283
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052805 | Ga0031228
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 158458797
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 50063530
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F076191	Metagenome	118	N
F089055	Metagenome	109	Y
F103436	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C2727568	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1037
C2731712	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1257
C2739312	Not Available	2318
C2741926	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	3924

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2727568	C2727568__gene_75372	F089055	LKVEKMNSTPECVTKTPEIEAREKLAAIFSDTEQRDNSKVNPELGKTAIDIENTSRMNSADNGAVDFCNQALGSYEKSLYHINNGPLETVQTIGISLQRLREYKTEGSCR
C2731712	C2731712__gene_77240	F089055	LKVEKMNSTPECVTKTPEIEAREKLAAIFSDAEQRDNSKVNPELGKTAIDIKMDFADNGAVDFCNQALGSYGKSLDYINNSPLETVQAIGNSLQLLREYKTKESCR
C2739312	C2739312__gene_81332	F076191	MKIIAENPAEEALLWRIKALSDELVNQDNRSTSMPMWTILDNNKAGKDYGAVMYFTGKAAEQHIEENGHHYDNPTTCVRSAHDNRELKDIVHLLILAGGNEIPSNHYGVLRDA
C2741926	C2741926__gene_83431	F103436	MMTTSKDGWCDDKSDAEILENLKDWVSKCDVSYKREALKKIDSAFALWGNDEYVSAVRLLDENEVFLKKSDWPYYALGIEILKARKHEFFNE