Sample 7000000282

Basic Information
IMG/M Taxon OID	7000000282 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052804 \| Ga0030530
Sample Name	Human stool microbial communities from NIH, USA - visit 2, subject 763678604
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

7000000282 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0063646 | Gp0052804 | Ga0030530

Sample Name

Human stool microbial communities from NIH, USA - visit 2, subject 763678604

Sequencing Status

Permanent Draft

Sequencing Center

Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	144181536
Sequencing Scaffolds	20
Novel Protein Genes	21
Associated Families	21

Dataset Contents

Total Genome Size

144181536

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	15
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct3pM2	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct3pM2

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

All Organisms → cellular organisms → Bacteria

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Ecosystem Assignment (GOLD)

Name

Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Type

Host-Associated

Taxonomy

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Maryland: Natonal Institute of Health

Coordinates

Lat. (^o)

39.0042816

Long. (^o)

-77.1012173

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F042910	Metagenome	157	N
F045105	Metagenome	153	N
F055739	Metagenome	138	N
F056623	Metagenome	137	N
F059982	Metagenome	133	N
F068856	Metagenome	124	N
F072366	Metagenome	121	N
F073573	Metagenome	120	N
F073574	Metagenome	120	N
F074898	Metagenome	119	N
F074899	Metagenome / Metatranscriptome	119	N
F075480	Metagenome	119	N
F077319	Metagenome	117	N
F082714	Metagenome	113	N
F082715	Metagenome / Metatranscriptome	113	N
F089054	Metagenome	109	N
F090514	Metagenome	108	N
F091068	Metagenome	108	N
F095494	Metagenome	105	N
F101191	Metagenome	102	N
F102166	Metagenome	102	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
C8305407	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	520	Open in IMG/M
C8307423	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	524	Open in IMG/M
C8354106	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct3pM2	645	Open in IMG/M
C8373306	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	717	Open in IMG/M
C8427150	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1092	Open in IMG/M
C8449119	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1463	Open in IMG/M
C8454567	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1616	Open in IMG/M
C8454859	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1628	Open in IMG/M
C8458027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1744	Open in IMG/M
C8460833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1865	Open in IMG/M
C8475572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3816	Open in IMG/M
SRS019685_WUGC_scaffold_20591	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1166	Open in IMG/M
SRS019685_WUGC_scaffold_26179	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	785	Open in IMG/M
SRS019685_WUGC_scaffold_31828	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	573	Open in IMG/M
SRS019685_WUGC_scaffold_34661	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	919	Open in IMG/M
SRS019685_WUGC_scaffold_45040	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2212	Open in IMG/M
SRS019685_WUGC_scaffold_51649	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1900	Open in IMG/M
SRS019685_WUGC_scaffold_52981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2480	Open in IMG/M
SRS019685_WUGC_scaffold_53710	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2267	Open in IMG/M
SRS019685_WUGC_scaffold_53788	All Organisms → cellular organisms → Bacteria	2115	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
C8305407	C8305407__gene_159122	F059982	TGTPAPTPMLTAVPESALAPFNVVLPEDAHVEMAEGRITLVRGDSRVVAMVISRVPDADPAAALPILMQDFDPKTSETMDFDAQPGFCILGGVVNDAFGDGEDKITLMVLADSGELLILSGYNLARDHHALYLFLTELLENVSMDGEAVYVAEDAAATASPEV
C8307423	C8307423__gene_160075	F073574	IVLNGSKELHIQLCGRLKRGLFGRNQLLADGDVLCVALHQPDGDVPLFYSRCDGYANVLDDRQPPAPIPLHPAICPKCRNAAFQLRLTFEYPEAEELAAFANPDDMFTWVWVTMRCTRCHAVFRGDFAAD
C8354106	C8354106__gene_183184	F089054	EVPGHTKDYTEGFTEEMVIPYRTEELNPYLRYPHQEINKNHLHSKFIRQRLREILQSDITIIDIIPLP
C8373306	C8373306__gene_193232	F075480	YGDTPDSFRQRVASALPKGEESRHVAFPRRAMVLAAALVLVLTTAYAAVVTQTELVWNAGHPIENEADDRLGLLTGKAGTSGDSLTIGGVTFTVQDGIYSPETGQLFASAVISADESVQLVGVESDMEWEVRAVTPVSEKLDPSGISWAEWAEQNGKTLVPIGMEAAPTLQFLKVNGQTTDTPLIGAFLTQNPDGTVSAGFQVDLTEADTSHLKSCEVQLECRVGAFGKDGKATQWQK
C8427150	C8427150__gene_224285	F042910	VLTLHEDGKRVLRVVCTQYPTMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDTAITTLTISAAGKISFQGLTLAPGAAIRIHHNAGVFAAEMVSDDSTVSILPYRTPDSADDLLLRPGVLNEIRVEAGSAAFVSGRCKGRYC
C8449119	C8449119__gene_239521	F101191	LLISHHPASAECLQLGEGMLLCGFDLDKALSSRDPLDCMAEAVADDTKRIGTTCGGGIFRAVPREFDPESGSHRLPFAGSIRLIDWRVTLSGTMLDVTPENLARLLPSGTEMTERVTTLTPKQARKPLSRLCWIGTTSRGLLLIELRNPLCISGASLTSMPDGAGRLPFTFLAQNDRPGDINLPARLYWWKEETHDAA
C8454567	C8454567__gene_243777	F072366	MLDILAIKADVYHLERQGKRLPVYRYLREVWQKELPSEGLTVLALQQMVDYVEYVDDLTVLGEPWEVENEYDLYQDFLLDVISWGLQKYRAKKRLLWQICYYVNAWATFYYIFGREITQDNVEQWKKTLFKEAKERYPDSLLFEFIPHAAQLDYVWFYRLTDEQRLQIRLEVGEWNLQKNNMDQAVQSYFDDAMTWYRDNGRKLLEAKNKTNN
C8454859	C8454859__gene_244006	F091068	LTADEEKLADAAFARAMAKIDRKEKQQKRRTVLHMLDRVVRVAACLIVAVGIAFPIALANSEAFREQILQLVLSINPETGMAHVGMEPAKEEQTANVPRMDVPDGWEGLFFPTFLPDSLPLVRCETTRGDQVHSEAYYADETRSLRFEEQDNLDGWNVRAADARVLTIYLHSVPGYLIDRQTEDTHEVSIIWAEGKRMLRVTSIGLPADEAVLVAQSVKKIFAE
C8458027	C8458027__gene_246771	F055739	EHSLTHHRAPETHRNIGLSRMMRIVITAVLMALMLTAVGVAAARFFSVTDVHPAQDGTEGEYQAHYLALEERYDSDLLSVSVNDAVYDGSVLAFTMEMAAKTDDVLAVEVRVRGECDGKMYRFDPLDVYGGEFQSLLMLPDLGGTFDGEKYAAEGILLDENGQMPPEGKTIAWTIEIDVLKAVWQTETMPDDLYEALSEEDDVAQYIREQAEQRVITLTDAGVEDYLLEMCGAGWDEIERISKADLLLRCGGFERAETYTVAFATEGNTQYVHPELSGLRIPLDGYTAVVDYVRASFLGGCVVLHCEAPNGTALPDVWRIYRNDEQNPAGEAGWARASGYAGVPGGVVDVNQPSICLYFAPCADLTSLRIVPEGEAGFTLNLSGEKGTE
C8460833	C8460833__gene_249328	F102166	WRISPEMRAFLMKKLFSLLLVLALALVPTLSLADDDAACQNLYNMLLDELKSVDLEMTADEESYRIYLGYALDKNSLGDADVIFDAYSDAVTINVSYSNPLDEALVPQVISFFNRVNSTLYVGKLMVIKSDNVWYAAYEIFLSVDPENITDWDRNNVLAYTALALDTMEAMVDYITEIANGESADNVFAMWQADIGAV
C8475572	C8475572__gene_265740	F077319	FSAGFNIRRSFYAGKHRLRGELYGARKAWRSKIMLIRNATLQMNATECACMDVRVMNGCVWEMGAALVKGLYESETDLCGDVLMPGRMLETPISAADEKALRLLCRRLYREGVRYFVADCPADALLRVQNRPERRGALPVTALPNPEPLRSGTGMPLTRWTAAGEFVGMMDEHSGD
SRS019685_WUGC_scaffold_20591	SRS019685_WUGC_scaffold_20591__gene_19980	F074899	SGRKQWNKQAVTSSFLDKKPPESLILQGLEGSTTLGKDEVGSSNLPSSSK
SRS019685_WUGC_scaffold_26179	SRS019685_WUGC_scaffold_26179__gene_25592	F095494	DPKEKEVQAILQAIDYGHLPPRETQRRLLNIIQAEAARTDAPTDETKIHTCMDLLERLQGEQKPIAPARVDALRQHIAAAHQKNERKRQKRKKIMAAAACSAAAIAVAFAVSHPLLWYANWTTSDEQQHFVTSHEIAIEMLETAVADPMLPSGDTVEVQSIAALDALIGRKTGIPEMVNGQWELQHRYVNFTRSGISISLMYVNAADAQQTIVGVINLISNPQYMMLSFEQSYEGTIQQFDGLNFYITENINKPVALWQGD
SRS019685_WUGC_scaffold_31828	SRS019685_WUGC_scaffold_31828__gene_31598	F090514	WSSRMNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADVPPRLTGANWFVILLTIVPTGSRTRAGSSLPLIPASNIFLKQTPRRGLPLAWNAGAGSFLFCG
SRS019685_WUGC_scaffold_34661	SRS019685_WUGC_scaffold_34661__gene_34692	F056623	MKSTEEMLQAAVQQLQTAEQARLTSETAPARRQLLHLLYAREAAALQSMTLVRAEIPAAQKRDWKPLILPLAAAVLNLGALALWLTLPSCVTPENSGWMGRFALCIVAQSVSLCAAIGSIVSAMRRKPPKPVAVADEPELRRRLVEVEGRIALDAQTIEALFAQESVTIISTGAETAAELYASLYEMAQDARLDGDANQEKALSWPLSNAKRLLNAVGCEAVDYAPETAMFYDVMDADITQQRRPAIVQKADGIVQQRGLYLRKG
SRS019685_WUGC_scaffold_45040	SRS019685_WUGC_scaffold_45040__gene_47891	F073573	MPTIVSFYQRFPNEAPPMNLSAFDHTGYTYAENFRRNERCYEAEQCEVTSDDGSVVLSLDVRIRPRGGEIEALPRVMLSVYSEGMLFQVRRMELRTGDTTYAILPDNVQQYTKRGDTDGGFLETMAIPLGKVGMKMLLEASDAAEARWVIQGARTAQTLPLPAAQKKAIRRFCMDCEESAITYQPAFLWYKDYCTKA
SRS019685_WUGC_scaffold_49347	SRS019685_WUGC_scaffold_49347__gene_55051	F045105	MSDKLKRVLDTNLAGLHVTDAQVNAVLRRVSQDEQRPRVIRWQAIAAVLLVLVLGAGVLLQTGILSDDSPQLTADVTRQGDFLTAAQVKKLLASAADLQFSVDEEAISALMTQVEKDGGCSLSTLLEILCPVGSSLGQWDIRAQVALSQTLERIGYQGILPGMTREPLSTEITAQDALARAVAYIRTNDDPQADFTNLDFYRVGIRFLSGVYDGTCEGAYYCVNFDALDAFGTTYEVAVNAEDGSICRMRRERGAGSNHTADEVTRGFRRIFGYDMRTWTPMQLRVYILALSRADRSSMQTVHELFLSVGRDGFPDVPAEALTREEAIDAALAIQGGSSSDVLAAEYLAGASGDFWKIAIRQPNAPSGQSIVYLELNGLTGTLLTTTYSGNLYGLPQEFFPSQLLSTLDRTDFSHGVPAVDAETAQSAASAAIERQYQRNMAEEGYTCFIESDFEDTAGGFSYYTGGGVVIFTKDAQNTSQGDIYWAALNWYGEVLDVGWNRNPLDAARFTLLMQGYLPPIYQRETVQQLQALLTGSLTDEAGLRQMETDGTLPLFNALLALEVVPDASTKSTADDVTAAALKSLNAHLCYENSSFLVYREDGELIWHFWLSTDMGYFLMDVRDSDLSVVGSVQIPSFSALRTSILLPVRVWNTLAENLRVTIFYRDANTQPSIVYGMYANHIVQRYVDLYGANILRWDQATLRSFQSAISISGSYVGDWSVACLCQTIYPDVPDYAISQAVAAEYAARALGDDDYSLRGGVLIDPGEGDPIWKVTLDYPDGRSFNAEVDCRTGAIRTLRQQDTRAMPFYTDYLDFPDDGEYWFRNFVLDEVIEQVRTQMTGRYGNNI
SRS019685_WUGC_scaffold_51649	SRS019685_WUGC_scaffold_51649__gene_59365	F074898	VSRPESGKDKKKTKKQCGTWNLSFSLTKRTKCCILYVAKAFVLYRKECFFMRKILSLLLILALFLPCALAETPQGIDLALTSTYGDGLSLRMTAGLGETPFCSLTLPSGQIDLAFSPDKELCVQSGGQWAQLLVEGHPVDAALLTTPLKLLDGRSPSEVLGLLAEDVNKMLDAIPSLYNLPMTLIRDPAFARLFSDLYIAAQTGTISITSEELNRLAASVLGKIYSMEYLDGLNFSDIYHNLLASVVQTSEVARAYRSAMRGYLLSNFRLSGQIGIEKGELLFRQPYQEPYHLTYEQTTPNSWHYLLTTANSDTIDGVLYWRNEYDFALSGYSENQHTAFSVTCSYGSANNFVFIASVDNSFSLSIVQAGSNFSLRLNNENANVFALNANVFSLESTSDYIRVKIYYNYYTLTITPATDGLDIVAQAGTFDIFTAHVRTALNGLICTGVYGDTTYRLALTETATGFSLLLSLPDGDFHLDFAALSDTSCSLTFTDAAGQQVSLTGSLCTPESPVIPDTLGTIELTQLLDGLF
SRS019685_WUGC_scaffold_52981	SRS019685_WUGC_scaffold_52981__gene_62315	F068856	VKDSGASAEGNALAAAHAVLGKERKGMKRLTSILLALLMLVGMALAEETPDAALGDWYALPSDETVLRLTLREDGTFFFGTEGISGIEGKWRKTTDGEYNLAYTNRSSSLLDVIMSMVDSQAPAPDMTMTARLTESGLDVFYGSTAEGAVVHMARDAEELRTERTPRTDTPLEAFAGTWTMETMFLGTMQLMYTPEMGERQVFCTIDGLTMFPGAGLESFPEGTSFPLTFEDGVLRTTIPLTVQMAASSALVKEIVVDYDLTFFQTADGSLYATLRLNDVPDNPETMFLLVPMEKE
SRS019685_WUGC_scaffold_53710	SRS019685_WUGC_scaffold_53710__gene_64145	F082714	MVVGIRFAADSPVRTVLQAVLPIFSTADVDFLVREYWVCTVGNGLPEQRFTAQEMQAAVNALTPNEHAELFTIYVLPHDAPDTPPSSCEDFCARGFTMAFYAYDGDGYALLAQSEEQVRAVIETLRKAVEIRSAEAVERETLARWAF
SRS019685_WUGC_scaffold_53788	SRS019685_WUGC_scaffold_53788__gene_64357	F082715	MMKFMKRVLSLLVSAMLLLGCFALAEEAPLLPIAIVSYDLTDEATTAALSALIEPKENALTRWERVVLSDGREAWVICQFDQTTMSNAWSRVIDAETQEVLQEDTTDTGFFATAQARWESAKGIYALWSIQDKMLFDRLYAMAPCYGEPVEGDLTQEEALAAALNVTGLTAA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

7000000282: Human stool microbial communities from NIH, USA - visit 2, subject 763678604

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences