7000000281: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764325968

Overview

Basic Information

• IMG/M Taxon OID: 7000000281
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052803 | Ga0031099
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764325968
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 63828318
• Sequencing Scaffolds: 9
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
Not Available	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041827	Metagenome	159	Y
F054109	Metagenome	140	N
F057446	Metagenome	136	N
F061925	Metagenome	131	N
F067847	Metagenome	125	N
F080165	Metagenome	115	N
F085821	Metagenome	111	N
F089056	Metagenome	109	N
F095630	Metagenome	105	N
F097490	Metagenome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2082547	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	809
C2093853	All Organisms → Viruses → Predicted Viral	1037
C2109773	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2989
SRS055450_LANL_scaffold_44956	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	765
SRS055450_LANL_scaffold_50145	Not Available	665
SRS055450_LANL_scaffold_53386	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	815
SRS055450_LANL_scaffold_67241	All Organisms → cellular organisms → Bacteria	3788
SRS055450_LANL_scaffold_75476	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2610
SRS055450_LANL_scaffold_77127	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2218

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2082547	C2082547__gene_118274	F057446	MNSISFGKTTITSYPEYFEIADNKKTNKLLYLSASLVFIGLYLFDLYQNDFDFAKVSHFKTISAVLWLVIFVLQFWLINTESKIEKSKIKEVVVRKNRWASIVIHYGGKKRKIEGFSQDEAEQIIKFLMNNR
C2093853	C2093853__gene_122716	F054109	KKGVKVHTAFKIYPKDKERAQIMADKLDLSLSAYINKAVLEKLAHDEKSEA
C2109773	C2109773__gene_129514	F080165	MKNKKFLLAILLSLTACNNKTKTISTLDLEKTIIDYKDLPSKVKERVFYGEAMKLGEEDEERFQDFQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIDKDGPMGGRYIIYGDSLYISNHYNIYEEDSLSYTFTRYILR
SRS055450_LANL_scaffold_44956	SRS055450_LANL_scaffold_44956__gene_23776	F041827	NRDLENNENNETPAPPKEERLVLASLYEFGSNVRFQYKNGNEINRMAMDGPHGEASMDFEYDTYGRIVKERRFHHRSDYGETIITYQYDNQSRLTSSHAISTQYYPDTGYTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLFVENGKVVKSLDENNQIIETIEYLNPKNTLRNMKGFPALVVEFYIRPFTYELPFYNGIEHIEDLRFIDNIKTRDFHNGSYWEYRYSYDKRKSHDNDYLEIE
SRS055450_LANL_scaffold_50145	SRS055450_LANL_scaffold_50145__gene_29074	F085821	KQQTTVAKFIEKGFKFTRQPDAQKFTFLVYDFFIAGNMPAVQLCIDYLVAQGYPTAENKKQFLNWIFMEPVYYLKYFISDASTQKKLHHDLLNLWYESNKRLLLEQDKGKHDEAYINAWNEANVNKTLSIIRSGETIASCKEDVVELAESLNDEYELNISLLDEYCRALLYTAETTESQQELVAETQNHIALLKDLYKKVNKIK
SRS055450_LANL_scaffold_53386	SRS055450_LANL_scaffold_53386__gene_32662	F067847	RKPSMFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPALVREFYNGILPEKIMKQVQQDPKYKELDDKLKETELNNL
SRS055450_LANL_scaffold_67241	SRS055450_LANL_scaffold_67241__gene_49745	F061925	MSWEYSINLDSEEAVSSVVTDLKICELFSSSTTDYIDWKNPKSIDDIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKQNYHITDCDTDEEVTLEHIFRSVI
SRS055450_LANL_scaffold_75476	SRS055450_LANL_scaffold_75476__gene_63785	F097490	PLIIKKMKVFCRIILPLLCIISCSERKEIEVYNMKIDENKKEVLVEIRNNTENNYYLLSPIVSIMAKHLQYIDGEMIEGQIHHKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYYNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM
SRS055450_LANL_scaffold_75476	SRS055450_LANL_scaffold_75476__gene_63786	F089056	MIFYRIVNLINSKFNPLIIKKMNVFCKIILPLLCIISCSKRKEADNTMVLEKNHTFFLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPTRRFKDKEVIIFMYYINSCCDNGQLLEECDVSFISITFTNKNKILFGKGIQ
SRS055450_LANL_scaffold_77127	SRS055450_LANL_scaffold_77127__gene_67560	F095630	MHYSSLYKISKDNGLLAHVYEHLLAQYILKYLQDRGFFISSDIILTAKTYGDTCYMDVDLHNPAAPNIYNEALRAFDKYTIPEKAVRRAVSECGIEMNRAVLELKQDELMSNLSRMQSSDWRQQSEMTYRKSYDKSSVDTLFCVPYLKYGKKSKKLFPEYVLEYSIDEEYINSPIDQALAAIVMQAVALNFLVAVRENYTVYDRGDQWSEASLSVGYRMFLGLAKEDKQITSQLKHEFTAYIQYLLKSPFCSNLQKALLRCSRNLEQVLLGRSTLNNILGGCVIGGRGWLEMADDARIKQMIAAIQLDVYDI