7000000275: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 764811490

Overview

Basic Information

• IMG/M Taxon OID: 7000000275
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052793 | Ga0028019
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 764811490
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 20663743
• Sequencing Scaffolds: 6
• Novel Protein Genes: 7
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
All Organisms → Viruses → Predicted Viral	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F081456	Metagenome	114	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1340102	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	596
C1352065	All Organisms → Viruses → Predicted Viral	1563
SRS052874_LANL_scaffold_18258	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	556
SRS052874_LANL_scaffold_18515	All Organisms → Viruses → Predicted Viral	2820
SRS052874_LANL_scaffold_19777	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1211
SRS052874_LANL_scaffold_20522	All Organisms → Viruses → Predicted Viral	2394

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1340102	C1340102__gene_39726	F018385	MAEFVNRWDPYAEVPIETHRDPVKDDHLIYGVNVPHFTVTVYSPDGRVNKYWNSRILEDMLGYCRIACPRDGKILKFKWSDWSVYMFTHDGLNELVFMPDSGRKIITQLFEKEVK
C1352065	C1352065__gene_44147	F027205	ADDILKAVKDSEEFERKALSEARKRDRAEGKAPRETLYPNPDLKPGREIVLDYIKNPERRRAPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIRK
C1352065	C1352065__gene_44148	F036281	MFSLIRVSEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWSAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAEREHGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF
SRS052874_LANL_scaffold_18258	SRS052874_LANL_scaffold_18258__gene_20718	F081456	MFEEPPIYYILISLIFLIVFGAISFATWLVWLTAVSFFVKLVITAIGFLFCAMTVILYTISAE
SRS052874_LANL_scaffold_18515	SRS052874_LANL_scaffold_18515__gene_21163	F027205	MRAVKESEEFERKALAEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFVVDVSQVRNRDLADEIEKDLFAFMDYLLDEYDIPRRIRK
SRS052874_LANL_scaffold_19777	SRS052874_LANL_scaffold_19777__gene_23375	F043991	MSKKNPSVIDYFSLNGDVVEEANEFDGISLDDWIDKRSSIKPSWVGQYSQQMHFDLADDTEVSFYKTPNVIYADILFTDGVRTILFKCRQKKNLTRFISRVLELANLGSKHVHPDFRA
SRS052874_LANL_scaffold_20522	SRS052874_LANL_scaffold_20522__gene_24971	F018385	MAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLYYEEVK