7000000269: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159611913

Overview

Basic Information

• IMG/M Taxon OID: 7000000269
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052787 | Ga0031040
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159611913
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 13042066
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F067846	Metagenome	125	Y
F074985	Metagenome	119	N
F081456	Metagenome	114	N
F103431	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1170006	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1294
C1170430	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1431
C1171642	All Organisms → Viruses → Predicted Viral	2281
C1172042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	3123
SRS017088_Baylor_scaffold_6954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	2252

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1170006	C1170006__gene_24246	F018385	MMAEYVNQWEAYKELSIENDRDPVLDDPIIYGVNVKHFTLTVYSPEGRVSKYWNARILQDQLGRCRIACPRDGKILCFAWFEWTSYMFSHDGLNELVFMPGSSRKTISRLYHEEVK
C1170430	C1170430__gene_24503	F081456	MFEEPPIYYILISLIFLIVFGAVSFATWLVWLTPVSFMAKLVMTAIGFLLCAITVILYTISAE
C1171642	C1171642__gene_25318	F074985	MELTDDGFYKTPRIIKGLAFLSHIHDVLDCGNEMYIQFRVNEEPEKVLSYQKLYDTDYDNSVLFILRERPQHSYLIQNIAEFEFIQYRPQTSWKAIHMGSTKRINIEQFEELYINDTFHHLHPVIFNHASQFWNVMGLELAVDEAESVWYLYLKRQDSDFMTRIKMPLTQKFLYNPLSNSWALDDPTEEITDHEKIKEVLRKDGVWDITVSGVPMKLIRVMNIAADILFFVFKDEEDKSRYYYARRSTKLRIVTDAETREVKYLLDHVKAIHVD
C1172042	C1172042__gene_25678	F067846	MSIIADWERQEFNKYDRRCCAEDAYNEAVEREIECIEEDIANCDDDVICVFREKMLDYDEVINAFDDDTFNDDEFIKAIALGNDFEEMRIKILTAMAEDRLEQLEKDYRNGYILND
SRS017088_Baylor_scaffold_6954	SRS017088_Baylor_scaffold_6954__gene_7348	F103431	MIDLDALIVGMLFFIQLFLQSIAWRVAIAHFLHAERGNAAAAAFDGAFRENIADCHAEDDNNKDAESQKEGFHVCIPEG