7000000262: Human stool microbial communities from NIH, USA - visit 2, subject 764224817

Overview

Basic Information

• IMG/M Taxon OID: 7000000262
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052780 | Ga0030586
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 764224817
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 105893443
• Sequencing Scaffolds: 6
• Novel Protein Genes: 9
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → cellular organisms → Bacteria	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F068941	Metagenome	124	N
F078004	Metagenome	117	N
F080163	Metagenome	115	N
F101357	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1606248	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2131
C1608816	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	2401
SRS047044_WUGC_scaffold_20673	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2116
SRS047044_WUGC_scaffold_22751	All Organisms → cellular organisms → Bacteria	3271
SRS047044_WUGC_scaffold_26485	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1458
SRS047044_WUGC_scaffold_29463	All Organisms → cellular organisms → Bacteria	5281

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1606248	C1606248__gene_155579	F013656	MSKTYKEPNKSETETTINVLYSEKMISIYTNKVGLQKQLNKLIGEPTKEYKFKRSIVGSMWEIPLDDKIRISRLVLKA
C1608816	C1608816__gene_157085	F101357	MNLNNITTALKTGITIYQYEQWQNIGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSEFDIQEYNEWLRANQYKLYPLLLDILKISLKDNFYNYSNASNIHYEGGKFPSMLTIQLFNLEF
SRS047044_WUGC_scaffold_1286	SRS047044_WUGC_scaffold_1286__gene_737	F078004	LQGFVKPDLMVLFPVCFLFFCKSSTGRLSAVAGSATLDIHMIRHALVIAVINTFYRLTVDADRMAWMRQGIAERFSSLSLLRKAFTAGSVTVAGVLATHHDVSLATQTVLIIGTIFHNAF
SRS047044_WUGC_scaffold_15083	SRS047044_WUGC_scaffold_15083__gene_28508	F078004	LSSRNTDFLLRDLLFRKSSTGGLSAVAGSAALDIHMIRHTLVIAVINTFYRLTVDTDGMAWMRQRITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTILIIGTIFHNTF
SRS047044_WUGC_scaffold_20673	SRS047044_WUGC_scaffold_20673__gene_41188	F068941	MKNNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVKASEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPNTMQNKTLSF
SRS047044_WUGC_scaffold_22751	SRS047044_WUGC_scaffold_22751__gene_46173	F044555	MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYMGNIPTVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHK
SRS047044_WUGC_scaffold_26485	SRS047044_WUGC_scaffold_26485__gene_55594	F013656	LNKGSTMKKIYKEPNKSETETTINVLYSENILSICTNKVDLQKKLNKLLGEPAKEHKIKRSIAGSTWNISLDDKTKIQKVILKANIYDM
SRS047044_WUGC_scaffold_29463	SRS047044_WUGC_scaffold_29463__gene_65000	F080163	MKTIKFLQESFETKERFQQEISIKYSYNRDTVESIDFRINQRNIRYFYEAMQNFENSLVNEFKEKKNNFCDAKQFLENINDFDKILFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYTHRDLSFSTKLESEILDSEIELLQEKLDLIREEICELIGINPNLEKQGHKDNYVFNLNIDSDNQIGLFLQATEL
SRS047044_WUGC_scaffold_29463	SRS047044_WUGC_scaffold_29463__gene_65001	F032312	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSYGNYKGSSMNFDAMVCLGFTWFKLLGVALMMLLWPIVFIYALNDGVEGYPFKKYAIPYIFILVAWFIIFLYGLVS