7000000261: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764508039

Overview

Basic Information

• IMG/M Taxon OID: 7000000261
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052779 | Ga0031031
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764508039
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 93895277
• Sequencing Scaffolds: 20
• Novel Protein Genes: 22
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphovirus contig89	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	7
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga gingivalis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia → Arachnia propionica	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F043991	Metagenome	155	N
F047127	Metagenome	150	N
F049707	Metagenome	146	N
F051211	Metagenome	144	N
F051212	Metagenome	144	N
F051214	Metagenome	144	N
F054111	Metagenome	140	N
F058221	Metagenome	135	N
F059076	Metagenome	134	N
F061925	Metagenome	131	N
F061926	Metagenome	131	N
F080165	Metagenome	115	N
F081456	Metagenome	114	N
F081510	Metagenome	114	N
F092231	Metagenome	107	Y
F095632	Metagenome	105	N
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C2166895	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	504
C2180754	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphovirus contig89	558
C2192348	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	617
C2232148	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1119
C2235104	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1215
C2247967	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2200
SRS016043_WUGC_scaffold_20422	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5040
SRS016043_WUGC_scaffold_22594	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	13367
SRS016043_WUGC_scaffold_26921	All Organisms → cellular organisms → Bacteria	8874
SRS016043_WUGC_scaffold_44369	All Organisms → cellular organisms → Bacteria	1025
SRS016043_WUGC_scaffold_54900	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	658
SRS016043_WUGC_scaffold_56134	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5338
SRS016043_WUGC_scaffold_56263	All Organisms → cellular organisms → Bacteria	6553
SRS016043_WUGC_scaffold_5627	All Organisms → Viruses	55149
SRS016043_WUGC_scaffold_56706	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga gingivalis	643
SRS016043_WUGC_scaffold_57020	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2868
SRS016043_WUGC_scaffold_57531	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1564
SRS016043_WUGC_scaffold_65155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia → Arachnia propionica	2397
SRS016043_WUGC_scaffold_65769	All Organisms → cellular organisms → Bacteria	1963
SRS016043_WUGC_scaffold_9044	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	57074

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2166895	C2166895__gene_150299	F047127	TKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDRMVGDRDIREILEKYNSK
C2180754	C2180754__gene_154158	F049707	YILIWEYGNDIRRVEFSERWAEYDETGWTVWYFRLVDGGIMTFSSREWEQKDDVNHLTTIWMKPSLYDIERKTS
C2192348	C2192348__gene_157295	F027205	RTHVASRLIVSADDILKAVKESEEFEKKALTEARKRDRAEGKEPREVLHPDHKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIPRRIRK
C2232148	C2232148__gene_168119	F051212	MKKFFFIFVLYWLHSCNGTEKTMTTSPDTQKLSISEKQNAEKIERIIYSQTGGDTGGKNVHLVITKDSIIYRLTEGVTDKKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSEELIMDLPTTKIIIKTNKKEYSKTNIQNNKTWDYITKQIIDIKFSQLYNHLNLEK
C2235104	C2235104__gene_168895	F058221	MGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKTLGVITNGVTEKYLGGMMDSGLVQNASFLANKFLLPSLEADSAKLLTNALLKRVRPSMKKTLIGLGVAVLTPIIIIQIKKRLDNFQQRETAKSLSKLI
C2247967	C2247967__gene_171972	F051214	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPNIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQIMHDKIDLKDEWI
SRS016043_WUGC_scaffold_18515	SRS016043_WUGC_scaffold_18515__gene_24530	F043991	MGKKKPSAVDGFDLNGNVIEEANEFDGVLIEEWVNQRSPIKPSWVGRYSDQMHFDLKDGTEVSFYKRPDIVYGDILFAEGIRTILFKCRQKKNLTRFISRVLKLAEMGPSSVHPDLRA
SRS016043_WUGC_scaffold_20422	SRS016043_WUGC_scaffold_20422__gene_27388	F043991	MSKKNPSVIDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNIKPTWVGKYSHQLHFDLADDTEVSFYKGLGIVYADINFPNGIRTILFKCRQKKNLTRFISRVLELAQCDSSNIHPDFRA
SRS016043_WUGC_scaffold_20422	SRS016043_WUGC_scaffold_20422__gene_27390	F027205	VASRLIVSADDILKAVKESEEFERKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFVVDVSQVRNRDLADEIEKDLFAFMDYLLDEYDIPRRIRK
SRS016043_WUGC_scaffold_22594	SRS016043_WUGC_scaffold_22594__gene_30581	F095632	MRPLKKGTTMSFKETAGYKVVNFVASTTASITAGAVVSALCPPAGVALTVVYSLGSGVLGSYVGDKAGQQYAENFAETIDSIKTPSNN
SRS016043_WUGC_scaffold_26921	SRS016043_WUGC_scaffold_26921__gene_37184	F051211	MKAKKAIRIFEKIRDLPYGTSGSDEVWSCYRKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHTLNLRRQRHERHVILRVFIDGSTYDIDPSIDIGLAPTLPIAHWDGTSNTATMASLKHLRVYRPHSLHERILSQLRSKLFRGNPKEFYIAIDKWLADTRSHQSP
SRS016043_WUGC_scaffold_44369	SRS016043_WUGC_scaffold_44369__gene_64554	F061925	LTKEKKKTGKSKQTNIRNNPMGWEYSINLDSEESVSSVVKDLKNCELFSSSTTDYIDWKKPKSIDSIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKHNHYLTDCDTDEEVTLEHIFRSVI
SRS016043_WUGC_scaffold_54900	SRS016043_WUGC_scaffold_54900__gene_81731	F061926	RYQIMMIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECNDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPLTEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS
SRS016043_WUGC_scaffold_56134	SRS016043_WUGC_scaffold_56134__gene_83726	F049707	VVSEYRSPHNDGHDPYILIWEYGTEVQQAEFSERWAEYEPDTGWTVWYFRLDDGRVMTFRALEWEQKDDVNHLTTIYFTPKKEQ
SRS016043_WUGC_scaffold_56263	SRS016043_WUGC_scaffold_56263__gene_83940	F080165	MKSIKILLLLLSLTACNNKTKTISTLDLEKVVINYKDLPAPVKKKVFPPNNGLITFGEENREEYESFQETNNPKKYEYYTKQDPQLAWVHAPYIRNKKTKQEYFIYEDGPMGGRYIIYGDSLYISNHYNIYEEDSLRYTFTRYILR
SRS016043_WUGC_scaffold_5627	SRS016043_WUGC_scaffold_5627__gene_6756	F105377	VRDFNELPLLTPEEAFERAWEEGGSAHPVFDRGYRVRGLNAWKAIETLLCQNDVPDITVASFGLKRFEEILDAIAMLHERGWHLWQTSANVYVDGEKRPVQAIRAHYRGY
SRS016043_WUGC_scaffold_56706	SRS016043_WUGC_scaffold_56706__gene_84686	F054111	MNKSLESITHEVFLKLMEHLKNLQEFTFLEYTMAPEADIFYFNFMEKTVKIKWDLDYGLFLETESLSIVDRDLFLNILDKEFLFLI
SRS016043_WUGC_scaffold_57020	SRS016043_WUGC_scaffold_57020__gene_85235	F095632	MTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGLGSSVLGTYVGDKAGRQYAETLAETIDSMKTPQTN
SRS016043_WUGC_scaffold_57531	SRS016043_WUGC_scaffold_57531__gene_86122	F059076	MTNKILLLGLLLGGISTNAQVINETKAAGKTGQKVGINTTIPTRTLTIKNSTANDGKPLLRLVDAPIYSKNVDSDMDADLGGNTATTTNYTDYRPLVVDKVGDVYQGLPINNMNILTLTISNVNGDYIRKFDTGIDYKKYAVAIMNAIFKMPDPGAGKIVMMRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQLTNNWEIYADYPNIGSYEFSLGSTSAGNVVNGTWVITLLVGKRDAVNFTELNFNQGGSAEGIGNSNTTYATQLQDFLQKLE
SRS016043_WUGC_scaffold_65155	SRS016043_WUGC_scaffold_65155__gene_100417	F092231	MIIFPPQEFITWTNKLMQFPWPIQVGDFAPYAEKLGWAPTSLPDEFSVCAGNNGGRVILGDDRSGNVRDLFLSMARNETEDAEGAAELNDHFVSCVAAGREAWGEPFLLEAGDGPGVTWRFPGDMFAQVTSGSRAVLFNFFTPEGRRQFL
SRS016043_WUGC_scaffold_65769	SRS016043_WUGC_scaffold_65769__gene_101608	F081456	FSRARKEHTMFKEPPIYYILISIIFLIVFGAISMATWMVWLTSIAFFAKLVITAIGFLLAAMTVILYTISAE
SRS016043_WUGC_scaffold_9044	SRS016043_WUGC_scaffold_9044__gene_11163	F081510	MKLPKLPNMQTIKSTAKSAMVTTKILGKKYAPFVLLGVGLVGYGYSVYAGVKSGKKLEATKAKYEAKDAAGEEYTRMEVVKDVAKDVAIPVAVATASTAAIVLGFAIQTNRLKAVSSALAIVTEEHARYRLRAKEVLDEATFKKIDAPLETKTVELDGQEVEVESIVPNEGDFYGQWFKYSTNYVSDDPDYNESYIKEAEKYLVDRMMRKGVLTFGEVLDKLGFDVPRAALPFGWTDTDDFYIEWDAHEVFDDVKQEYDLQFYVRWKTPRNLYATTSFKDFVPKKTRKELN