7000000252: Human stool microbial communities from NIH, USA - visit 2, subject 158479027

Overview

Basic Information

• IMG/M Taxon OID: 7000000252
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052770 | Ga0030543
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 158479027
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 137633241
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044554	Metagenome	154	N
F071326	Metagenome / Metatranscriptome	122	Y
F087336	Metagenome	110	N
F088914	Metagenome	109	N
F099451	Metagenome	103	N
F105374	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2118969	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	816
C2125597	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	864
C2148441	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1096
C2161503	Not Available	1304
C2162043	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1315
C2179090	Not Available	1787

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2118969	C2118969__gene_121932	F099451	MEIKSVGQLRKIIENLSDDYEIEMRVRRKLTDEELKNCRYPYPYDTEYLILEFDDIGVSDKVLCLGVTSNR
C2125597	C2125597__gene_126761	F105374	TVISVTARGFGYYFCTFRLILRPGFGAAENIRYLVLSKGVFAMKKRVALLVALCIWKVVAAQTPYGEMPERFRPDTLPCRLGGGVCFGMDGLDAAIPRGEGASSCRDPRVVFVAGDTLITFISVAGVANTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVARSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP
C2148441	C2148441__gene_144576	F087336	MHCLLRGMVAELEQVPKAFRAAVNQRRAAVKERIKGDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLEIAFQILPLKSKQKRAP
C2161503	C2161503__gene_155873	F071326	LDKANKLYSIGMKNIKLQLKLLGTEFVVLRPNEKSKWKNVFGGSYSSSSTLENDYDQFTTKLILNQNELRDVWNRNRDNLEVYTDDGSLEVGDELQYTRGKYTFRFKISLKMGYSEVAEVFYVYTLNSIVETLDM
C2162043	C2162043__gene_156365	F088914	VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENIKNPGKFIVFSAWYAAKALEMDVN
C2179090	C2179090__gene_173381	F044554	VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFPFSFRTNFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFDSHRYCFSAFLVL