7000000246: Human stool microbial communities from NIH, USA - visit number 3 of subject 159227541

Overview

Basic Information

• IMG/M Taxon OID: 7000000246
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052764 | Ga0030604
• Sample Name: Human stool microbial communities from NIH, USA - visit number 3 of subject 159227541
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 126664595
• Sequencing Scaffolds: 8
• Novel Protein Genes: 19
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Ackermannviridae → unclassified Ackermannviridae → Ackermannviridae sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2
Not Available	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F042095	Metagenome	159	N
F044555	Metagenome / Metatranscriptome	154	N
F050794	Metagenome	145	N
F057001	Metagenome	137	Y
F064725	Metagenome	128	N
F067720	Metagenome	125	Y
F075481	Metagenome	119	N
F077313	Metagenome	117	N
F078004	Metagenome	117	N
F078006	Metagenome	117	N
F080673	Metagenome	115	N
F083451	Metagenome	113	N
F085718	Metagenome	111	N
F089054	Metagenome	109	N
F089591	Metagenome	109	N
F089592	Metagenome	109	N
F098313	Metagenome	104	N
F105375	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2298102	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Ackermannviridae → unclassified Ackermannviridae → Ackermannviridae sp.	1179
SRS078176_LANL_scaffold_125	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	63080
SRS078176_LANL_scaffold_15207	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	34821
SRS078176_LANL_scaffold_2064	Not Available	34217
SRS078176_LANL_scaffold_22651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	1705
SRS078176_LANL_scaffold_2311	All Organisms → cellular organisms → Bacteria	13844
SRS078176_LANL_scaffold_23494	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	11694
SRS078176_LANL_scaffold_24673	Not Available	19815

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2298102	C2298102__gene_162061	F067720	MASTTYEHFVDINKMSAAQEQFRHITKMVTKCHRFAVLVDMVRNAGQLPQPFWLGAACGGGSC
SRS078176_LANL_scaffold_125	SRS078176_LANL_scaffold_125__gene_282	F075481	MIRLRISLKAVFCLGLSLFLSSCGSRRQVSDTSIDNRLISRIETMIDEVMDRKIVEIRTSDLNADIVITERKFDTTKEVDPSTGERPVSSQTDAHIVIGRRDSTVTVDSLGIDKTITGVKDIDKKTDIEHKDVDDKKESRWPIAITSISVLLILLVLIYLLKKMKVL
SRS078176_LANL_scaffold_125	SRS078176_LANL_scaffold_125__gene_287	F042095	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVDNSYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGENNYRIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTSFPIVDMPGLEFLVVSHTLYVNDGIPVDRLSRSKKLIYIGLSNMGQRMTVIPEAIISKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLETLDLSSCYLDRYIKEFNDLPKLKTLNITPAPSDMWNYFDINTLPFFEVDKINPNITDFYFLSDWMSGERRTGWNDDNMSGRGLEHLTGFIAANSNSLRMDKLPDYIYEMRAITWFNVNASTRSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYDAIHPTENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPE
SRS078176_LANL_scaffold_125	SRS078176_LANL_scaffold_125__gene_294	F089591	MTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLVKYYLNRKDDETIRSIQNLLVYWMSLDNAGRMDDPESTSFNLPDDYLWFSNIKGVFSYKGCEATDFVMWEAKNENIHELLGDENNRPSYDYRETFYSIGNGKVVVYESGFRTEEVKMTYYRRPVRVDLSGYINAAGERSTDIDPELPDPLVEEILDMVAKQFNLNENELSRYRMDKDNVASFK
SRS078176_LANL_scaffold_125	SRS078176_LANL_scaffold_125__gene_295	F089592	MKEILKSRKVLAEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSKAYNTGFYPRSRCYNGLDKNEIDKLVKQRVDNIMKPFEEMSQMDLSQTNLEFWDDAKDKIFMGKVYNTANTVELFYLYLAVFSGMLTPQEMDGDPVFMNSMFCFVEKDNMKDFVQQREINKMNISYKFISALKKGGDDRQAVIDLLLYIGIVTRPDFTEDEYYTGSLSNWMNEKKTNVDYLLDIWDRSLEGDFKEVLEFYRIVNVLQRNGRINMTPSGLQYNGQIIGPDVRTSAEFLATKKDFINIKANVLDEYEEIISMSNIDDKSKTKKVKDVKKKEDVGEGDKEE
SRS078176_LANL_scaffold_125	SRS078176_LANL_scaffold_125__gene_328	F057001	MTSKDINKVQNEVKKASEKTLTGAVKAWCQLFKSGKEINEILKDNDIKVDKAIVPALVALAKDKETVIQLCKDILPRVNNTFCAYKEVEREYYDKNDKDKNKKLKMNEIEDIAILGSSHKRFGYNEPIACDFGIYYETFNGADKRIIKCAVPIKRYTFNLIAKCVAYYLTHPKNER
SRS078176_LANL_scaffold_125	SRS078176_LANL_scaffold_125__gene_333	F080673	LATIEINMDEIELLKLQNEALSYLRDNITKDEAYYILTTDKDIIEILIADKKDGSKRIKILDMEYTIEKDDMLLLFDTDGIIDECLLVASYIGVNMYFRRQDVNAILNNINREKVMKYPYIAIQLDNIQTIEKRRVIFEITGHRVDYDKVDFMFVYFMARIL
SRS078176_LANL_scaffold_125	SRS078176_LANL_scaffold_125__gene_339	F078006	MGDNILRKAADELKKAGCRVFAWQDDTYNRGWSKGDYTMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSCGSGSGCHIKEEATFDLETALDVLNGPLPRWCRSYGVYPKQYDNIDKWYNSDNHNKKLFKEI
SRS078176_LANL_scaffold_125	SRS078176_LANL_scaffold_125__gene_340	F085718	MVIEFDFEIYKNGDYDKVYLRNGKEPRVLCDNGKGNSPMVVMIEDDKADDYIILRYNETGRRNINGQSGLDLMLSVKEREPELWVVVISYMDNKDKRQKMVLPNFFSKNIRGNIYLQGSSKSNVSYYVGRLEEDGCFDELCEKIRVKRDRIYNMEIISLSDDEATV
SRS078176_LANL_scaffold_15207	SRS078176_LANL_scaffold_15207__gene_33840	F083451	MYKSEKEKQILDLLMSRKDIRKLVEKSNECYSKMDFVGAMRYRQEIKDIVDRESKIMLTKSESLIGLMNNADNEYKFNMLVWLHSMMCMADVFSGILEDFKDGVRKANGNSKFVKFDNLDRLMAECKKEIDYLMKGTNKSFQISFAVRSDELREMIENMVGDNIREGYDMFKEEAKMTKETDRSKIEEFNKKLDHDQM
SRS078176_LANL_scaffold_15207	SRS078176_LANL_scaffold_15207__gene_33885	F098313	MREMEFDFVIYPLKLIITVGLDYKTLCDRFENMEPEHEGKWGDEDDMDKEASFANLVGDRDDDDKFAILWNFSSDDDLIMRNICHESFHIAMSVCQFCNMSLGFKVGEDEHAAYIAGFAGDCVSEFINSKNTD
SRS078176_LANL_scaffold_2064	SRS078176_LANL_scaffold_2064__gene_4699	F089054	MLTKGKFLVSFEVPGHTKEYTEGFTEEMVIPYRTEELRPYLRYPNQEINNNHLHSEHIRLQIREMLQIPLRDITIIDIISLP
SRS078176_LANL_scaffold_21542	SRS078176_LANL_scaffold_21542__gene_48854	F078004	LSSRNTDFLFRDLLFRKSSTGGLSAVAGSAALDIHMIRHTLVIAVINTFYRLTVDTDGMAWMRQGITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLVIGTIFHNTF
SRS078176_LANL_scaffold_22651	SRS078176_LANL_scaffold_22651__gene_52015	F105375	FRLMKNNETFQTTQHLDKLVINLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVSFAMNFTDGEANIKSINRISSNIMQITFTV
SRS078176_LANL_scaffold_2311	SRS078176_LANL_scaffold_2311__gene_5282	F032312	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIISLYGLVS
SRS078176_LANL_scaffold_2311	SRS078176_LANL_scaffold_2311__gene_5286	F044555	MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYMGNLPTVPDLEKPIQIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHDK
SRS078176_LANL_scaffold_23494	SRS078176_LANL_scaffold_23494__gene_54481	F050794	MLYTSNYFVKVRQKQLLDHTYSLSRDQAFDYMTEFNKRLSDKVGIKCTMDILLPTDDDNANIIIEHNGIIKKLMKEAEKLELDTDAIEAMMRDLLDELKDDIDLNILIFDVTQLLIKYNLFRLEAITEQEFKNSFVRMDSMNMEIKKLTLSDIKKVVEMIEDRYSYALYMTEEYG
SRS078176_LANL_scaffold_24673	SRS078176_LANL_scaffold_24673__gene_58063	F077313	MSKYVIKRKIPKYQEAGEVGSYMLGNMDGIQGLGIEPLVNTNQGLPAPVNPLGIYSLDTPDQLRAKYANAFDQDSVFPASFKGSLQRIAENYQDNGITLNNITVNDVDKSKTGSGETDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQDREARQRRQSQMQYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVTQPGEAPMEAMGQKHADDGTPVSLEQGTKVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALEKLEKNNKIDDENTRRLNASVLSKAINDSNDIVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEEDVAEAKKELLKKVAGIRQKMEIGGTSLFGRKLTFRPIENRFNNDPNYFGYQRQGTDGSYGGVNTDERLNYYKTFNPVAYDAYMGASEGARARALQDAIYGQTSSWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKLGLFTTSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDVVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVEEPDVKLDMPELIDPNTLPKTNTNAGKSNSGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVETNRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGRYINEVEQGNVAQRAWADNVNARTWADTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDAKIGPNGQLIADPQGDILSYRILYPAQEVTKGKKG
SRS078176_LANL_scaffold_24673	SRS078176_LANL_scaffold_24673__gene_58071	F064725	MTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITERIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYDWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLVQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSHERMWPNAFDKYIKLI