7000000239: Human stool microbial communities from NIH, USA - visit 1, subject 763496533

Overview

Basic Information

• IMG/M Taxon OID: 7000000239
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052757 | Ga0030475
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 763496533
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 174891667
• Sequencing Scaffolds: 4
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039198	Metagenome	164	Y
F044554	Metagenome	154	N
F047755	Metagenome	149	Y
F078004	Metagenome	117	N
F090484	Metagenome	108	N
F098313	Metagenome	104	N
F099406	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
SRS013951_WUGC_scaffold_10315	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	40014
SRS013951_WUGC_scaffold_56621	Not Available	133254
SRS013951_WUGC_scaffold_65857	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1162
SRS013951_WUGC_scaffold_69073	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	11975

Sequences

Scaffold ID	Protein ID	Family	Sequence
SRS013951_WUGC_scaffold_10315	SRS013951_WUGC_scaffold_10315__gene_17248	F039198	MQITNTEIQGTKYVQIYLTEEELQKKETKDLVKKYKQEEYSVAIFVSGKENYPEILEKIITKQEGLNRNVC
SRS013951_WUGC_scaffold_56621	SRS013951_WUGC_scaffold_56621__gene_97399	F090484	MIKISFRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFDELFRMTDSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGEPNSQAEVVDGSHSYYGLIDSTISNKTIALYLNVGLTKEKEIVSMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKEEKEKVSKKNDFNFFLKDNTHILNFLNAEEVVSEDGEILGIDRKKTKEEEARSLASIMAKEAHKNFWDGYEQSTQNQIVRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSGWSQEKIATVKSGMAEAEACCDEVGTSVAGVCGRISRRMKSYNNTVADKKADFNEVRDMYAEFAGDMAKAVGSVNEDICTYVKAEQFKEKIENMDITIRSLSNNNTTDNDTGLDGESIFKDIPFEELSFCNDTYLYPISHYSSFQ
SRS013951_WUGC_scaffold_56621	SRS013951_WUGC_scaffold_56621__gene_97419	F099406	MAEVGYNSKFEGLEVDSRLEKVIQAEVATAEAEGKGGLIPAPPAGSQDGSKALLSNMTWGDNITKQYVDNAVSAAGWKKQIVTVLPNVDEAADNVMYLVKDDLASTETGNVYNEYILVTDPEGVKSLESIGMVSTSVDSTYLDLSIFPSTSGTLDEDSFAKVMDAYNNNITLGKLSFNYFSLDYFLDNDNSELKIIAVLFNNTNLEEEVPGSYIDIEMVTYVVAQDKTYRAIANTVTLFNTMLSYLEFMAKTPNVVTTLASLPTDAYNIIANVASATNLSMSVSSEYAGREWQVRVNNTTGSDITQPLPTTGQFQSMSGDSVTIPVNSFIELSIWYINDKLVIRVGENA
SRS013951_WUGC_scaffold_56621	SRS013951_WUGC_scaffold_56621__gene_97457	F098313	MNGGILRLFYLPLLKKRMKEKEFDFVIYPLKLIITVGLDYKTLCDRFENAELDHEGEWGDEGDLDSKASFVNLVRDKGDDRAFKLLWNFQSENEMTMRNICHESFHAAMSVCQYCNMSLGFKVGEDEHAAYIAGFVGNCAGEMFGFLEKDKDGKEN
SRS013951_WUGC_scaffold_65857	SRS013951_WUGC_scaffold_65857__gene_118673	F047755	MENEKVKYLIDMINDMDKKDKLRLAICMSKSEWSGLIYNTKENYEKFDNMLKSIDEEYRTTIINFNKYPLITFAMAKLMEMNATEQNKIAMYLFNCITWI
SRS013951_WUGC_scaffold_69073	SRS013951_WUGC_scaffold_69073__gene_130827	F044554	MAVCLPCIFFHTQAYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL
SRS013951_WUGC_scaffold_9783	SRS013951_WUGC_scaffold_9783__gene_16331	F078004	IHMIRHTLIITVIDALYRLTVDADRMAWMSQGAAERIPPLSLLRKAFTAGSVTVAGVLATHHDVSLATQTVLIIGTIFHNAF