7000000233: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765094712

Overview

Basic Information

• IMG/M Taxon OID: 7000000233
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052751 | Ga0031050
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765094712
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 81430023
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	1
Not Available	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049707	Metagenome	146	N
F054109	Metagenome	140	N
F063778	Metagenome	129	Y
F080165	Metagenome	115	N
F095631	Metagenome	105	N
F101358	Metagenome	102	Y
F101360	Metagenome	102	N
F103434	Metagenome	101	N
F105378	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2441577	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	517
C2507692	All Organisms → cellular organisms → Bacteria	1306
C2525951	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	26539
C2525953	Not Available	26931
SRS018573_WUGC_scaffold_18901	All Organisms → Viruses → Predicted Viral	1510
SRS018573_WUGC_scaffold_24764	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	10028
SRS018573_WUGC_scaffold_25798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	2029
SRS018573_WUGC_scaffold_31727	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	597
SRS018573_WUGC_scaffold_37681	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	918
SRS018573_WUGC_scaffold_8525	Not Available	58531

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2441577	C2441577__gene_111740	F080165	TACNNKTKTISTLDLEKVVINYKDLPAPVKKKVFPPNNGLITFGEENREEYESFQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIDKDGPMGSRYIIYGDSLYISNHYNIYEKDSLQYTFTRYILR
C2507692	C2507692__gene_139637	F101358	MTEKYSASHGAENQASPPLPRQPEHLLTQPITTDGTPKERATHPDTHSIPKRQDVPRHQWNVLRSSGQLDEGWIDTEIIDKGGTVLVRMTKLVNRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGMMIKDGRLQPVADTTHATTSSQEQQTEVLPAQSDNTYDHLGG
C2525951	C2525951__gene_149690	F095631	MASDAVSANTVARSYSDTVINTVKNDTMLNANIYDINQYIENIKKKYISEDDLTLSMGIFGYLGDVNSNALQNAVSMAAEYSNEAIPIKAKFEKNVISHALSLGINKIYAEPSTMNAMLIFYENELILNTVNDTFRLDREVKIMVGDYEFHIPYDLIIKRILLPTGDYVYTGMYDTTQVNPIITRNSKDVDPYLKPTIKSQIDGQPVIMCLVELRQYEFSTIHKTIVTSNPLESKMMQFEFDNQLAGFDVDVKEYGNPVRKLKPVYNGLNTDGVNDFCNYTFIDSSTIRIMFDNASYLPTANTEVTVNLYTSQGSKGNIKYKDTVYFRVNSTNINYDRLNLLVVPTGEAQYGLDKKSISDLKKLIPKEALARGSVTNSTDINNYFNTIADEDNKIFFFKKMDNPLSRLYYAFLLMNTTTNIIPTNTIPVECIRRDFDNISDSNYILTAGNSIKYDGKTNASVVYNASKDELKKISNESFLYMNPFMCIINKKPLYVSYYLNIMDVSKILEFTYVNQDSKVQFITNNMNWKRSYLTKRDTYVCDISILQNIQSNIGIIHRDDPYDPNKITGADLKVIAVFYSDDKYQVPYRWAEAKFVNYDESSYSFDYRFELNTDNKIDKNVRLKVNDVHEMKAAADKFEPGYMLNNMPMKIFVYCKNVFEYDAGRNKTEQYFADGFLNGYSLTNEYTVKYGIDFLYNYSDLIESVIKIKKQDNGQISYYIDRVPVIGYDYVNTEDKIQNFINELEKKRIHILDCLDVLEDSFGIDIKFFNTYGPSKIFYIENSVPINRVNLSLKFKIKLLTASDKYIIDYIKNDIRKYIEDKSKITDVHIPNIITYITQKYADSITYFEFLDFNGYGPGYQHIYRKDESIVGKIPEFLNINSTNTEDNKLDINIIIA
C2525953	C2525953__gene_149723	F105378	MNINVYVNNIKKWVQISSDEVLDRNKNLSDLKDKNAAIINLGLYDKFISKEALESGFLPDIFTPENIVTDSNHQFVTDTEKNKWNNKLNKPIANQDHLEENQIGYDELNEKFYIGLNNKNVLIGGASELDNVKVVNGFFSGNSQATVIRNTKQNQNGEFIRPMFVDVQCTEYTGGDLGEISVTYTAEAINVYNTGSFTGSFQCMIVYPLGSANR
SRS018573_WUGC_scaffold_18901	SRS018573_WUGC_scaffold_18901__gene_24597	F103434	MVGFRPRRGRYLENGPHVVEVTLAVIKEGRTGRRFERGETFTIDKVLVQPSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIIKGPESLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTEAK
SRS018573_WUGC_scaffold_24764	SRS018573_WUGC_scaffold_24764__gene_32508	F049707	VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDETGWTVWYFRLVDGGIMTFSAREWEQKDDVNHLTTIWMRPSLYDIERKEN
SRS018573_WUGC_scaffold_25798	SRS018573_WUGC_scaffold_25798__gene_34006	F063778	MPETISEGAQQQLLRQLQDALGLVADADTSAQDVAAITHSAADGHQLTEVMLQQMTAIEAYLKNCQTSINDAMGNIEAIPLDPPPED
SRS018573_WUGC_scaffold_31727	SRS018573_WUGC_scaffold_31727__gene_42577	F101360	VSKKSAARRAAIAAHIAKVASQEKKNALKELEEYMEPGDTTKPQVDGLQVGTVSVSAPQPRYQVVDEKALVTWLEWNKPDAVHKVPAPWFVSAAALDGFIKQTGEVPDGVEVVQGDPRISVRISAAQEESIRELISTGDISLLEIEGGDV
SRS018573_WUGC_scaffold_37681	SRS018573_WUGC_scaffold_37681__gene_52345	F063778	LQDALGLVKNADTSAHDVAAITHSAADGHQLTEVMLQQVTAIEAYLKNCQVSINDAIGNIEAIPLDPPLED
SRS018573_WUGC_scaffold_8525	SRS018573_WUGC_scaffold_8525__gene_10730	F054109	MIKEKINMTGRPRSKKGVKVHTAFKIYPKDKERAQAMAEKLDISLSSYINKAVLEKLAHDEKSEA