7000000231: Human stool microbial communities from NIH, USA - visit 1, subject 763840445

Overview

Basic Information

• IMG/M Taxon OID: 7000000231
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052749 | Ga0030480
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 763840445
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 129061140
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039198	Metagenome	164	Y
F042936	Metagenome	157	N
F044554	Metagenome	154	N
F088914	Metagenome	109	N
F090513	Metagenome	108	N
F105374	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1540740	Not Available	1109
C1543830	Not Available	1165
C1573791	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2280
C1574341	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2325
SRS014613_WUGC_scaffold_26748	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3313
SRS014613_WUGC_scaffold_32712	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	2162

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1540740	C1540740__gene_161930	F044554	ARPTHGCAAACGGSAQGKCCAAGGGSVSWRSASPCIFFHTQAYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLLLSFPFSFRTNFAQALFSSLLFVSDTCAKSILFLLFESEIAHLQGQYRFNSHRYCFSAFLVL
C1543830	C1543830__gene_163120	F090513	MAKYVRKMEWKLLHIKHILYMRPFGALKIAPQSVGNKNGTKAVLQGWAAA
C1573791	C1573791__gene_175735	F088914	VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDSLFSVPYTPKENIKNPGKFIAFSAWYAAKALEMNVK
C1574341	C1574341__gene_176013	F042936	MGRGGGKGRVWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEEALTLPYLGKVYFRSRLRGK
SRS014613_WUGC_scaffold_26748	SRS014613_WUGC_scaffold_26748__gene_67576	F039198	MQITNTEIQGTKYVQIYLTEEELQKKETKDLVKKYRQEKYSVAIFVSGKENYPEILEKIITKQVELNKNVC
SRS014613_WUGC_scaffold_32712	SRS014613_WUGC_scaffold_32712__gene_87795	F105374	LRPGFGAAENIRYLVLSKGVFAMKKRVALLVALCIWKVVAAQTPYGEMPERFRPDTLPCRLGGGVCFGMDGLDAAIPRGGGASSCRDPRVVFVAGDTLITFISVAGVADTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVVRSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP