7000000230: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764285508

Overview

Basic Information

• IMG/M Taxon OID: 7000000230
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052748 | Ga0031024
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764285508
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 131575077
• Sequencing Scaffolds: 14
• Novel Protein Genes: 16
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctSdk10	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
Not Available	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F040149	Metagenome	162	N
F043235	Metagenome	156	N
F043991	Metagenome	155	N
F045567	Metagenome	152	N
F049707	Metagenome	146	N
F051211	Metagenome	144	N
F051213	Metagenome	144	N
F085821	Metagenome	111	N
F095630	Metagenome	105	N
F095632	Metagenome	105	N
F097526	Metagenome	104	Y
F103431	Metagenome	101	N
F103434	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C3375364	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	619
C3415223	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctSdk10	816
C3419644	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	849
C3435380	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1009
C3462190	All Organisms → cellular organisms → Bacteria → Proteobacteria	1675
C3470590	All Organisms → cellular organisms → Bacteria	2435
C3471786	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2659
SRS015574_WUGC_scaffold_26009	All Organisms → cellular organisms → Bacteria	43013
SRS015574_WUGC_scaffold_49322	Not Available	545
SRS015574_WUGC_scaffold_53396	All Organisms → cellular organisms → Bacteria → Proteobacteria	24395
SRS015574_WUGC_scaffold_59617	All Organisms → cellular organisms → Bacteria	1243
SRS015574_WUGC_scaffold_74364	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1492
SRS015574_WUGC_scaffold_79103	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2261
SRS015574_WUGC_scaffold_8009	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	44888

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3375364	C3375364__gene_198081	F045567	VHTSTHRVEDALLAVDGDILTPRDGTYIVQTERVVVVLVSQEDRIDTIDTETCGLVVEVRATVDEDTLPALGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEKPRLTEREGAW
C3415223	C3415223__gene_215480	F027205	VASRLIVSADDILKAVKESEEFEKKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFVVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPKRIRK
C3419644	C3419644__gene_217495	F051213	MKVSKLLWAVVMALTFVLISCDRVTDEPTIEGEMKKLFDSQAQRKSFRVLTASGKPYNHKVDWHIVGIMVPSSDTYLTKKVDTLSNGDLKISYDWVSFTVRENKSVIDVEVQKNETGKVRSVYFSTRNSDRQITLPDMRVTQRAE
C3435380	C3435380__gene_224788	F043235	DALLDRPDRSKRELHQGAVNGDDIVQLRHMDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKIQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH
C3462190	C3462190__gene_238463	F103431	MIDLDALIVGMLFFIQLFLQGIAWRIAIAHFLHTERGNAAAAAFDGAFGENIADCHAEDDKDKDTESKEEGFHVCIPEG
C3470590	C3470590__gene_243429	F051211	MKAKKAIRIFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWKDLPIPEHILNLRRQRHERHVILRVFIDGSTYNIDPSIDIGLAPTLPIAHWDGTSNTATMASLKHLRVYRPHSLHERILSRLRRKLFRGNSKEFYTEIDKWLADTRAHQSS
C3471786	C3471786__gene_244108	F043991	MSKKTPSVIDYFSLNGDVIEEANEFDGISLEDWIDKRSSIKPSWVGQYSQQMHFDLPDDTEVSFYKTPNVIYADILFAGGVRTILFKCRQKKNLTRFISRVLELANLGPKHVHPDFRA
C3471786	C3471786__gene_244111	F018385	MMAENVNQWESYKELSIENDRDPVLDDPIIYGVNVKHFTLTVYSPEGRVSKYWNARILQDQLGRCRIACPRDGKILCFAWFEWTSYMFSHDGLNELVFMPRTNSRLPSTLWNTKGAK
SRS015574_WUGC_scaffold_26009	SRS015574_WUGC_scaffold_26009__gene_28031	F049707	VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDETGWTVWYFRLVDGGVMTFSSREWEQKDDVNHLTTIWMRPSLYDIERKTS
SRS015574_WUGC_scaffold_26009	SRS015574_WUGC_scaffold_26009__gene_28052	F095632	MTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGVGSSVLGTYVGDKAGRQYAETLAETIDSVKIPSTN
SRS015574_WUGC_scaffold_49322	SRS015574_WUGC_scaffold_49322__gene_55934	F085821	IEKGFKFTRQSDAQKFTFLVYDFFVAGNMPAVQLCIDYLVAQGYPTAENEKKFLNWVFMEPVYYLKYFISDASTQKKLHHNLLNLWYESSKRQLLEQDKGKHDEAYIDAWNEANVNKTLSIIRSGETIASCKEDVAKHSRTLNDEYEQNIGLLDEYCRALLYTAETTESQQELVAETQSH
SRS015574_WUGC_scaffold_53396	SRS015574_WUGC_scaffold_53396__gene_61267	F097526	MTADNKTPITPYTQDGYSQLCERLEDDTVVATLRAHIDTFAADGNRALLKRFTEGLRIAGEMEKACRVGDPTPAEEERRERWDSNFKQLQQHARMAGDQITNADNAAVSRLTAQCERNGRSDTELSVAHDDAYGFAVALRDIPLNEKQTALLWRMAVLTIAEMTDTTPSLAAGYLNGTAGEHLGRMLAEKTVYPVTV
SRS015574_WUGC_scaffold_59617	SRS015574_WUGC_scaffold_59617__gene_69416	F085821	MNNVFEQLAPLAQTKKQQTAVAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYLIAQGYPTAENKKKFLNWIFMEPVYYLKYFISDASIQKKLHHDLLNLWYESGKRQILEQDKGKHDEAYINAWNEASVNKTLSIIRSGETIASCKEDVAKHSRTLNDEYEQNICLLDEYCRALL
SRS015574_WUGC_scaffold_74364	SRS015574_WUGC_scaffold_74364__gene_92295	F040149	VADEGAKEFRWKVLIREQGIPVLFVEVVAWYDGRVSSSEILRSVGIALEREPRLAPVWSHDSEDAIDYFIYDASVPKGHALTAVRE
SRS015574_WUGC_scaffold_79103	SRS015574_WUGC_scaffold_79103__gene_102999	F095630	MHYSSLYKISKDNGLLAHVYEHLLAQYILKYLQDKGFFISSDIILTAKTYGDTCYMDAELHNPAAPNVYNEALRAFDKHAIPEKAVRRAVSECGIEMNRAVLELKQDELMSNLSRMQSSDWRQQSEMTYRRSYDKSSVDTLFCVPYLKYGKKSNKLFSECVLEYSVDEEYINSPIDQALAVIVMQTVALNFLVAVRENYTVYDRGDQWSEASLSVGYRIFLGLAKEDKQITSQLKHEFTAYIQYLLKSPFCSNLQKALLRCSRNLEQVLLGRGTLNNILGGCVIGGRGWLEMADDARIKQMIATIQLDVYDI
SRS015574_WUGC_scaffold_8009	SRS015574_WUGC_scaffold_8009__gene_8050	F103434	VVEVTLAVVKEGRTGRRFERGETFTIDKVLVQPSAGDALKAVENRVIRGGLTDETTLKVFGTGRKWPGGPHSWVKIIKGPDSLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTESR