7000000225: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763820215

Overview

Basic Information

• IMG/M Taxon OID: 7000000225
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052743 | Ga0031327
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763820215
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 59449688
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042387	Metagenome	158	N
F051211	Metagenome	144	N
F061925	Metagenome	131	N
F067846	Metagenome	125	Y
F078842	Metagenome	116	N
F092230	Metagenome	107	N
F097525	Metagenome	104	N
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C5563817	All Organisms → cellular organisms → Bacteria	522
C5584202	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	649
C5602494	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	873
C5603612	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	895
C5606598	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	961
C5614879	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1248
C5616944	All Organisms → Viruses → Predicted Viral	1375
C5626771	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	10033

Sequences

Scaffold ID	Protein ID	Family	Sequence
C5563817	C5563817__gene_74684	F061925	SVVTDLKICELFSSSTMDYIDWKNPKSIDDIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKQNYHLTDCDTDEEVTLEHIFRSVI
C5584202	C5584202__gene_86055	F051211	WSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEHILKIRRQQYERHVILRVFIDEFAYDVDPSIDIGLTPMLPMACWDGKSSTTTMAPLRRLRVYRPHSLHERILSQLRRKIFRSNPESFYTAIDIWLATIRVS
C5602494	C5602494__gene_97767	F092230	MVNKLKTHLLKVFLPLFIVCIILVAFFRQIGCGSEGEYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDGIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNGSEYINMAYGEGSVEVSDSTSTGEVQNTEEKEARDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILIVIDMAVGYYSYLKPETVYEFYCKLRRKEKYPSDVNLVKRIGFLVIILPPCMLFLLIV
C5603612	C5603612__gene_98558	F078842	MIISSIYKTADNDGLIAHVYEHLLAQYVLKRLQDNEFFVLSDIILSAKTYGDTCFMDAELYSSEAKTTYDKVLREFDKLVIPEDDILRAASECGIEMNRNIAEVDRSELSKKLHEVQISPWRKQIDMVYRKAHDESSVNTLFRASYIKYSKESDDLFRECVLEYSIDESHIQTPIDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGSLKKDDKIINQLSYDFLEYIKILSSSVFCDNLQKALVRCSDNHKQVILNRSMLNAILGGCVIGGKGWLE
C5606598	C5606598__gene_100706	F097525	MFKIQNAYQKIIFSIHGNRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLDLLEWFEQISADKEKSTEIDFIESELAFEYQNKKLTVLLCYDIAPVSYGEEPYQLTFSLDDKTLAMIIKELGEAVASFKKV
C5614879	C5614879__gene_107192	F042387	MAGLFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENKKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKTNYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYSYSGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPNGHFYLNPNNMVVIDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDEDENTIADYLNFRWASHNPTLIQKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVIMMVYEYNK
C5616944	C5616944__gene_108975	F067846	MSIIEEWERQEFNRYDRRCCAEDAYNEAVEREIECIEEDISNGDSDAICAFSEKMFDDDEFLKAIALGSDYEEMRIKILTAMAEDRLEQLEKDYRNGYILND
C5626771	C5626771__gene_122134	F105380	MTIVELDTSQYVKQGRIFKKFESNLLDSYMDGRQTKYNINLADLDDQISDGIVYADKTGKMIYKFSAKKIVQTAITKDLTISGLADEFKMDYYSFWVPDIYLLSYSGFNPDNGLCLAYRKKYEEYICLTNIFPDRREQENSYFPNGKKLETKSICTGSMMADIDSAEYAAWKNDAVTRASQYVNKFLSARGNADLNFVSSSLRSKVPSHDMKKFAEFLGSITKEQENVNTYEEFIEWTKNTKWLK