7000000214: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763759525

Overview

Basic Information

• IMG/M Taxon OID: 7000000214
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052726 | Ga0031018
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763759525
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 74923267
• Sequencing Scaffolds: 22
• Novel Protein Genes: 23
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	8
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → Viruses	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	4
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctSdk10	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F030786	Metagenome	184	N
F036281	Metagenome	170	N
F042387	Metagenome	158	N
F049707	Metagenome	146	N
F051212	Metagenome	144	N
F051214	Metagenome	144	N
F054111	Metagenome	140	N
F059076	Metagenome	134	N
F061927	Metagenome	131	N
F064818	Metagenome	128	N
F064819	Metagenome	128	N
F067846	Metagenome	125	Y
F071327	Metagenome	122	N
F081454	Metagenome	114	N
F081456	Metagenome	114	N
F089056	Metagenome	109	N
F097490	Metagenome	104	N
F097525	Metagenome	104	N
F101358	Metagenome	102	Y
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C2596579	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	604
C2606190	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	676
C2608600	All Organisms → Viruses	699
C2620406	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	847
C2626962	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	979
C2638613	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1454
C2641978	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1760
C2647062	All Organisms → Viruses → Predicted Viral	3147
C2647258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	3265
SRS015158_WUGC_scaffold_14037	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	781
SRS015158_WUGC_scaffold_15111	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	844
SRS015158_WUGC_scaffold_28316	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2061
SRS015158_WUGC_scaffold_32828	All Organisms → cellular organisms → Bacteria → Proteobacteria	3205
SRS015158_WUGC_scaffold_3572	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1608
SRS015158_WUGC_scaffold_36649	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1601
SRS015158_WUGC_scaffold_41844	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	736
SRS015158_WUGC_scaffold_45629	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctSdk10	1831
SRS015158_WUGC_scaffold_51358	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1871
SRS015158_WUGC_scaffold_53858	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1827
SRS015158_WUGC_scaffold_58115	All Organisms → Viruses → Predicted Viral	3693
SRS015158_WUGC_scaffold_58412	All Organisms → cellular organisms → Bacteria	53450
SRS015158_WUGC_scaffold_9428	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1002

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2596579	C2596579__gene_121156	F097490	NTENNYYLLSPIVSIMTKHLQYIGGEMIEGEIHHKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYMEIETVHIGFPYNGYYNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM
C2606190	C2606190__gene_124270	F049707	VVSEYKSPHNDGHDPYILIWEYGNDIRRAEFTERWAEYDETGWTIWYFRLVDGGIMTFSSREWEQKDDVNHLTTIWMKPSLYDIERKAS
C2608600	C2608600__gene_125070	F105377	VRDFDNLPLLTPEEALERAREMGWNRPLFDHGYRVRGLEAWKALETLLRQYDVEDLVIASFGLKGIEEIFDACAMLHERGWRLWQTTAKVYVGGELRTVQAIRAHYRG
C2620406	C2620406__gene_128883	F064818	MNKDEFLKELIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNKEVGDFFEQEMDNTFLKMLEDESKEFRNLFFAQNSFQLSHYYYGFPIMTNDDTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPPCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGK
C2626962	C2626962__gene_131065	F081454	MKTFKLILLLFITSASLVFGQEKRYFFKYEFQPNSKYLIKYKIDMDGGYKFVGSKEVIDKIGMDGVKMTINSDIESTFSTQKKQGENVPFILEYTKYFYEAEINGETINRKIPLQGVKLIGDIVNGKKMEVKNVEGKIDEDTKKILVESIKQFSAIDTHFPKEGLKIGDSFDMVIPYKQSIPQVGDIEMKMNVKYKLLKVEKEEAYFDILIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKSVVTQQKIK
C2638613	C2638613__gene_135139	F042387	MKRIILFFMAGLFLISCSRENDKMTDETLANSAKMQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKTNYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYSYNSSEVLVNENVKYHSESYAYNLKDENFTHTYVLNGENITKIHHEISKNVPSGHFYLNPNNMVVIDEEVTYDAKNSPYKKIKGFSALATEFCGLDKDENTIADYLNYRWVSHNPTLIKKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNIDNQTITTMVYEYNK
C2641978	C2641978__gene_136367	F064819	MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDIERSYLEELTRNLKDLCECKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDESYMNSINFSFQTDLNGIATFSKEISQELKKI
C2647062	C2647062__gene_138485	F018385	MMAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNTKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISQLSLDS
C2647258	C2647258__gene_138594	F067846	MSIIEAWELLEFNKWDKQCSKEDDYNRAVEMEIEAIKENIANCDDDVICVFREKMLDYDDVINTFDDDTFNDDEFIKAVALGTDYEEMRIKILTAMAEDRLEQLEKDYRNGYILND
SRS015158_WUGC_scaffold_14037	SRS015158_WUGC_scaffold_14037__gene_15349	F071327	MEELFNSVYSTHKGISFSTVVVFGAFIFLLLQAHLSYKGAVSDVLRKTNFFSMMLLYVQGILGVFLGIYSPEFSEVSGFSSLLKHFEYGISILLCAGMMTYVYTYIKNNKQLSLKIVVIALVAALLFEYAYPWRLIFG
SRS015158_WUGC_scaffold_15111	SRS015158_WUGC_scaffold_15111__gene_16749	F059076	GGASINAQNINETNAAGKTKQKVGINTTIPTRTLTIKNSTADKGKPVLRLVDAPIYSKNVGSAMDADLGGNTATSTNYLDYRPLMVDAVGDVYKGLPINNMSILTLTIDKVNGDYIRKFDTGIDYNKYAVAIMSYTFKMPAPASGGIVMLRGGSNTPSVAHGGNKYGVTTAPATVLLTQNGSNWGIYADYPNIGSYEFTSGSTDIGQLVDGTWVITLLVGKRDAVNFTELNFNQGGSAEGIGNSNTTYATQLQNFLKKLE
SRS015158_WUGC_scaffold_28316	SRS015158_WUGC_scaffold_28316__gene_33136	F089056	MNVFCKIILPLLCIISCSKRKEADNTKTLEKNHTFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPNRRFKDKEKIVFMYYINSCCDNGQLLEEYDVSFIAITFTNKNEILFRKGIQ
SRS015158_WUGC_scaffold_32828	SRS015158_WUGC_scaffold_32828__gene_38965	F064818	MDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNREVGDFFEQEMGNAFLKMLEDESKEFRNLFFVQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLKNLQANHFKFIQAAEVLSPDLLHYIKKFPSCFFNTALVALLIIEKNLLSLNDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQAAKQRILQRK
SRS015158_WUGC_scaffold_3572	SRS015158_WUGC_scaffold_3572__gene_3284	F054111	MVFKNLEKENMNKPLDNITHEVFLKLMEHLKNLQEFTFLEYIIAPEADIFYFNFMKKTVKIKWGLDYGLSLETKALYTSDKDLFLNILHKEILSLENQ
SRS015158_WUGC_scaffold_36649	SRS015158_WUGC_scaffold_36649__gene_44206	F097525	MQQKKIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFEQISADKEKSTEIGFIEPELAFEYQNKKLTVLLCYDIAPVSYGEEPYELTFSLDDKTLAMIIKELGETVASFKKK
SRS015158_WUGC_scaffold_41844	SRS015158_WUGC_scaffold_41844__gene_51098	F051212	MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKSVYLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTNIQNNKTWDYITKQVIDIKYSKLYNHLNLEK
SRS015158_WUGC_scaffold_45629	SRS015158_WUGC_scaffold_45629__gene_56221	F081456	MFEEPPIYYILISLIFLIIFGAVAFATWLVWLTSISFMAKLVMTAIGFLLCAITVILYTISAE
SRS015158_WUGC_scaffold_51358	SRS015158_WUGC_scaffold_51358__gene_64535	F030786	MLVVMIVTGSLQLLLKNGSTTKGRNAVGTKKISLADITDGDKSKVVAIKVKYFDDDGADKIFENNNNRILNTINSQHISFNSQTAEYSKPQLFLLYQSLKVDC
SRS015158_WUGC_scaffold_53858	SRS015158_WUGC_scaffold_53858__gene_68785	F061927	MKNSIFILSTMLILGSCSSDSAQKATEKIKNAYSEGLRKTFIKEGIKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNSPKDLDERIDKAISSCIGK
SRS015158_WUGC_scaffold_58115	SRS015158_WUGC_scaffold_58115__gene_77908	F051214	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVIRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWI
SRS015158_WUGC_scaffold_58115	SRS015158_WUGC_scaffold_58115__gene_77913	F036281	MITLIKVDEGPVDIYELRMQYLAKLKETNGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPTPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDLKSKFTRHAITNEKGHQSYDWVLKNVEWAADTIRYF
SRS015158_WUGC_scaffold_58412	SRS015158_WUGC_scaffold_58412__gene_79420	F101358	MTEKYSASLPPRQPEYLLTQPITTDGTPKECATHPDTHSIPKRDDVPQHLWNVLRSSGQLDEGWIDREIIDKDGTVLVRMTKLVNRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGVMVKDGRLQPVADTTHATTSSQEQQTEILPAQGADTHEHLDGDSARRLVGSVAAKASDGEVDNSLLVRRALKR
SRS015158_WUGC_scaffold_9428	SRS015158_WUGC_scaffold_9428__gene_10011	F059076	MTNRILLLGLLLGGASINAQTINETNAAGKTGQKVGINTTIPTRTLTIKNSTPNDGKPLLRLVDSPVYSKNVGSAMDADLGGNTATSTNYLDYRPLMVDAVGDVYKGLPINNMSILTLTISNVKGDWIANFDTGINYNKYAVAIMSATFKMPSPASGGLVMLRGGNNVPSVDFGGGKYGVTTAPATVLLQQHGANWAIYADYPNIGVYELSSGSTTLGQEVNGTWVITLLVGKKDAVNFTELEFSQGGNNSGTGITNNTYKTGLENFLKKLE