7000000200: Human stool microbial communities from NIH, USA - visit 2, subject 158802708

Overview

Basic Information

• IMG/M Taxon OID: 7000000200
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052711 | Ga0030552
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 158802708
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 169160711
• Sequencing Scaffolds: 8
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057385	Metagenome	136	N
F067720	Metagenome	125	Y
F068941	Metagenome	124	N
F074964	Metagenome	119	N
F082887	Metagenome / Metatranscriptome	113	Y
F087335	Metagenome	110	N
F090484	Metagenome	108	N
F097493	Metagenome	104	Y
F099406	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C3119408	Not Available	708
C3184652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1329
C3214008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2335
SRS023526_Baylor_scaffold_24790	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	568
SRS023526_Baylor_scaffold_26999	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	668
SRS023526_Baylor_scaffold_30514	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	58468
SRS023526_Baylor_scaffold_3806	Not Available	42575
SRS023526_Baylor_scaffold_7841	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus	2720

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3119408	C3119408__gene_192480	F082887	MEKIKTIAKYAINILAIISALVAGINAVDGITIPYAVQIIQVIAVIQGVISTYLLGQKVVRNRGENRENNRDKPKV
C3184652	C3184652__gene_224020	F057385	AINDLLAALSLTGYQQGDEAGFDLNLSGKSVLGMASLTTAAEENQLMYVSSALLGGVIAVNSKDVEAIKEKALRATMKMSGQSDEEIDKAIEESKEQLSGNAEYTALMEASANLSSMTEEQLMEELTQADTTAFMTMMNEILSGAEMAEVTEQPGDCDAAKNYVKVTVPPEKIAEMTKALLEMIHSVPSIGAYMDAFFSAADTSWDDLLKELDEADLYADDVVYEYWMTEAGELVRMTASVKINNGGEEPLPMSFTMTRNTADGVATWLVTIKSAEDTAATLTFAGDLENFTANLTAYDGEDPVEINVSGKGVGTDSSVVDVEIKETVDGVEQGFGVVVTTFATMDGEQGVRKVDVLVRFMGLDVVTITAETRTCDAKDALDVSKAQDLGAMTDSEFQTWFVKVMNNLQNLPMTLLMSLPESMLTLLMGGSN
C3214008	C3214008__gene_240827	F097493	MKNGTAYFYERGVKIDGTVYGIHTDRDILRIKRRIVNDKFAETDDNFDMGVEIAKIQHTDVTFEQPTAEQLEQIQAKTYNSMTELKQHVQSVMNGDETMSQDEINAMLLLKIAEMEVAITNEQTTN
SRS023526_Baylor_scaffold_24790	SRS023526_Baylor_scaffold_24790__gene_51710	F087335	ERRNDMIELYFNDANLLPENREEEQYAEATLNNILAGKTADTEMCILPCFYDAPLHKGLLYHLNDGTTLRIRPILNEAGEPELLIRCVTEETVEKMYQRVSNYD
SRS023526_Baylor_scaffold_26999	SRS023526_Baylor_scaffold_26999__gene_56932	F068941	NMKNNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVIASEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPDTMQNKTLSFNLYATGKNATLNG
SRS023526_Baylor_scaffold_30514	SRS023526_Baylor_scaffold_30514__gene_65797	F067720	MASTTYRHPGDVTGMFAAQEQFRDITKMVCARFRDLTKTYHLGNANKMVTKCHRFTVLGNMVRNAGQLPQPFWLGAACGGGSHSLSASVARA
SRS023526_Baylor_scaffold_3806	SRS023526_Baylor_scaffold_3806__gene_7942	F090484	MIKISRRDSRIRFKNQKDLLHKLGISYSKFKNMTGHPMFNELFRMTDSTFVARRYRVNGVQLTLGCGKVNLPKNRILIKIKKNEITNHGKVLDRIREAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKNFWDGYERSTQNQIVRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKTYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISIQSLPNINTTVDNDKELDGESVFKDIPFEELSFYNDTYLYPSSQYSSL
SRS023526_Baylor_scaffold_3806	SRS023526_Baylor_scaffold_3806__gene_7961	F099406	MAEIGYNSKFEGQEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDHVTKQYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASAETKNVYNEYILVTEEGGTKVLESLGMVSTGVDSSYLDLSIFPSTSGTLDEDSYAKVLNAYNNNITLGKLSFYYFSLDYFLDNDNSELKIIAVLFNNTNSKEDVSGSYIDIEMVTYVVSQDKTYRAIANTATLSNDMLSYLKFMAKTPNVVTTLASLPIDAHNIIANVASATNLSMAVSAEDVGREWQVRVNNTTGTDITQPLPISGLFQSMSGDSVVVPKNSFIELSIWYINDKLVIRVGEQA
SRS023526_Baylor_scaffold_7841	SRS023526_Baylor_scaffold_7841__gene_16376	F074964	MITKKNVNKLQNAVIKENAANLVGAVKLYNALFANGADLKAICKALEIPAEYAVKVASLAKDKKRLVAVCSQMLPKVGDTFVKFTLYSKIYKDSKVNKEKGIENKEVKNIAYGEEYKPFGFASPEPLEGKNSAKWLTRETDEHRATYVATRIASYSIRTIAKCVSEYLAHESNQQ