7000000193: Human stool microbial communities from NIH, USA - visit 2, subject 764184357

Overview

Basic Information

• IMG/M Taxon OID: 7000000193
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052698 | Ga0030579
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 764184357
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 130414053
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042936	Metagenome	157	N
F074899	Metagenome / Metatranscriptome	119	N
F087334	Metagenome	110	N
F088920	Metagenome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C1824032	Not Available	663
SRS048870_WUGC_scaffold_15164	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4021
SRS048870_WUGC_scaffold_32330	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	529
SRS048870_WUGC_scaffold_34231	Not Available	542

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1824032	C1824032__gene_163821	F042936	GGKGRVWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSRLRGKG
SRS048870_WUGC_scaffold_15164	SRS048870_WUGC_scaffold_15164__gene_24647	F074899	MSGRKQWNKQAATSSFLDKKTPQSLIQQGLESSTVVGKDEVGSSNLPSSSNKTL
SRS048870_WUGC_scaffold_32330	SRS048870_WUGC_scaffold_32330__gene_57057	F087334	MASRYPFVAAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRAAALFEYREKHQ
SRS048870_WUGC_scaffold_34231	SRS048870_WUGC_scaffold_34231__gene_61464	F088920	FFSFVSANLHHYPAFGAGVILHLILHFSQKVAIFAPKRAFSLLFVPTLFFAGLSVLSPQTSPKISGQTSLYQPWLSPYCLFKD