7000000190: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160380657

Overview

Basic Information

• IMG/M Taxon OID: 7000000190
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052695 | Ga0031048
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160380657
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 45958652
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	4
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces urogenitalis	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043991	Metagenome	155	N
F051211	Metagenome	144	N
F071329	Metagenome	122	N
F085821	Metagenome	111	N
F092232	Metagenome	107	N
F095631	Metagenome	105	N
F101360	Metagenome	102	N
F103434	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2363708	Not Available	643
C2370615	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	736
C2371975	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	762
C2388520	All Organisms → cellular organisms → Bacteria	2118
SRS018337_Baylor_scaffold_11004	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	22663
SRS018337_Baylor_scaffold_17078	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces urogenitalis	8753
SRS018337_Baylor_scaffold_21329	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	17799
SRS018337_Baylor_scaffold_22545	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	12820

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2363708	C2363708__gene_72947	F085821	KGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYLVAQGYPTAENEKKFLNWVFMEPVYYLKYFISDASTQKKLHHDLLNLWYESNKRLLLEQDKGKHDEAYINAWNEANVNKTLSIIRSGETIASCKEDVAKHSRTLNDEYEQNIGLLDEYCRALLYTAETTESQQELVAEIQNHIALLKDLYKKVNKIK
C2370615	C2370615__gene_76684	F043991	MSQKNPSVIDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNVKPSWVGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLELANLGPKHVHPDFRA
C2371975	C2371975__gene_77458	F071329	MRPLYSKGILMLPVAKIIISGLSSIGAGMIASKLTKPLVSNANGIAKILLWFGSVGTGVAASAIVAREVELQFDATVKAVQEARDHVEIED
C2388520	C2388520__gene_87909	F051211	MKAKKAIRIFEKIRDLPYGTSGSDEVWSCYQKCILLKQELQHIGITSQLLIGVFDWQDLQIPEHTLNLRRQRHERHVILRVFIDGSTYDIDPSIDIGLAPTLPIAHWDGTSSTATMASLKHLRVYRPHSLHERILSRLRRKFFRGNPKEFYTAIDKWLADTRAHQSS
SRS018337_Baylor_scaffold_11004	SRS018337_Baylor_scaffold_11004__gene_12516	F101360	SKENALRKAAIAAHVAKVASQEKKKALKELEEYMAPGDTSKPMIDGLQVGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVAAAALDGFIKQTGEVPDGVEVVQGDPRISVRISTSQEEAIRELISTGDISILEIESGDA
SRS018337_Baylor_scaffold_17078	SRS018337_Baylor_scaffold_17078__gene_19409	F103434	VVEVTLAVVKEGRTGRRFERGETFVIDKVLVQPSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIIKGPESLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTESK
SRS018337_Baylor_scaffold_21329	SRS018337_Baylor_scaffold_21329__gene_24592	F092232	MINQAKFIADYNERNRPKFNDKFFQKSDDDIIEDLKDVILSCQRDKFYTIRVEKFEVIDDYAEIQRLLTGEETPTISIKDSDLKILKVTYYTAIGNQEDTFDVLIAVPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTSSASAKTQSITLKTNSNAVKMLRNFFEFKLSDGETFKKLASFSVYLFDHKVTLFEYYLARFGWYKTISEFKFDHVIKVTEEDPQDDEYDTFVVQNSHMKTPIYISAVRSVLDADRILQSFVAAFIISINKYATKKFTLDNIYNTDFWICKLGFNFVSSETSVFTKGNAIIESLENSYDIPTQKRLRLPDEIKSNIYSVLKWMASEFSYIRLKDNLDASSKRIRWSEYIAAMYIMIINLKLRRLPEKPDPNVEVLRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGEGNGKKVAQNIRAVDISQLGIIDVNTSSASDPGVGGMLCPLNDKVFEYNSFTNEPEPNTWDANFDELLKIYRDQKGYTSAIALAEDAGLELTDDRSPESVAFDTEYLGNLIGKIAPTKAFETQLRPAFINMEDSGSIIFED
SRS018337_Baylor_scaffold_22545	SRS018337_Baylor_scaffold_22545__gene_28299	F095631	MASDAVSANTVVRSYSDTVINTVKNDTMLNANIYDINQYIENIKKKYISEDDLTLSMGIFGYLGDVNSNALQNAVSMAAEYSNEAIPIKAKFEKNVISHALSLGINKIYAEPSTMSAMLIFYENELILNTVNDTFRLDREVKIMVGDYEFHIPYDLIIKRILLPTGDYVYTGMYDTTQVNPIITRNSKDVDPYLKPTIKSEIDGQPVIMCLVELRQYEFSTIHKTIVTSNPLESKMMQFEFDNQLAGFDVDVKEYGNPVRKLKPVYNGLNTDGVNDFCNYTFIDSSTIRIMFDNASYLPAANTEVTVNLYTSQGSKGNIKYKDTIYFRVNSSNINYDRLNLLVVPTGEAQYGLDKKSISDLKKLIPKEALARGSVTNSTDINNYFNTIADEDNKIFFFKKMDNPLSRLYYAFLLMDTTTNIIPTNTIPVECIRRDFDNISDSNYILTAGNSIKYDGKTNASVVYNASKDELKKISNESFLYMNPFMCIINKKPLYVSYYLNIMDVSKILEFTYVNQDSKVQFITNNMNWKRSYLTKRDTYVCDISILQNIQSNIGITHRDDPYDPNKITGADLKVIAVFYSDDKYQVPYRWAEAKFVNYDESSYSFDYRFELNTDNKIDKNVRLKVNDVHEMKAAADKFEPGYMFNNMPMKIFVYCKNVFEYDAGRNKTEQYFADGFLNGYSLTNEYTVKYGIDFLYNYSDLIESVIKIKKQDNGQISYYIDRVPVIGYDYVNTEDKIQSFINELEKKRIHILDCLEVLEDSFGIDIKFFNTYGPSKIFYIENSVPINRVNLSLKFKIKLLTASDKYIIDYIKNDIRKYIEDKSKITDVHIPNIITYITQKYADSITYFEFLDFNGYGPGYQHIYRKDESIVGKIPEFLNINSTNTEDNKLDISIIIA