7000000186: Human stool microbial communities from NIH, USA - visit 1, subject 809635352

Overview

Basic Information

• IMG/M Taxon OID: 7000000186
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052691 | Ga0030547
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 809635352
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 102380872
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	2
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F076064	Metagenome	118	N
F099451	Metagenome	103	N
F101357	Metagenome / Metatranscriptome	102	N
F105374	Metagenome	100	N
F105375	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1680183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	1061
SRS022524_Baylor_scaffold_18600	Not Available	625
SRS022524_Baylor_scaffold_23906	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	1326
SRS022524_Baylor_scaffold_43724	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	904
SRS022524_Baylor_scaffold_44257	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	5786

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1680183	C1680183__gene_200121	F105375	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVSFAMNFTDGEANIKSISRISSNIMQITFTV
SRS022524_Baylor_scaffold_18600	SRS022524_Baylor_scaffold_18600__gene_42948	F099451	LRPGEYASGLLIKKIMAIDKIKTVGQLRKVIENLSDDYEIEMRIRRKLSDDEIKELYNKYGRIYPYPYETQYPELEFDDIGVSDKVLCLGVELKDK
SRS022524_Baylor_scaffold_23906	SRS022524_Baylor_scaffold_23906__gene_55576	F101357	MNLNNITTTLKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIYNPDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDDFYNYSNASNIHYEGGKFPSMLTIQLFNLEF
SRS022524_Baylor_scaffold_43724	SRS022524_Baylor_scaffold_43724__gene_102425	F076064	LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAAMKGVMLFTPEAEKLMLAEDYFSARRQIRLCAPDLKRLNETRRHPM
SRS022524_Baylor_scaffold_44257	SRS022524_Baylor_scaffold_44257__gene_103713	F105374	LRPGFGAAENIRYLVLSKGVFAMKKRVALLVALCIWKVVAAQTPYGEMPELFRPDTLPCRLGGGVCFGMDGLDAAIPRGGGASSCRDPRVVFVAGDTLITFISVAGVADTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVVRSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP