7000000185: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159551223

Overview

Basic Information

• IMG/M Taxon OID: 7000000185
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052690 | Ga0031267
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159551223
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 106664458
• Sequencing Scaffolds: 8
• Novel Protein Genes: 9
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3
All Organisms → cellular organisms → Bacteria	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033081	Metagenome	178	Y
F046433	Metagenome	151	N
F054110	Metagenome	140	N
F080164	Metagenome	115	N
F084362	Metagenome	112	N
F094007	Metagenome	106	N
F103430	Metagenome	101	N
F103433	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2948052	Not Available	672
C2980236	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1064
SRS017120_Baylor_scaffold_11426	All Organisms → cellular organisms → Bacteria	1790
SRS017120_Baylor_scaffold_12886	Not Available	33640
SRS017120_Baylor_scaffold_43546	All Organisms → cellular organisms → Bacteria	12699
SRS017120_Baylor_scaffold_46555	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	642
SRS017120_Baylor_scaffold_54	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1239
SRS017120_Baylor_scaffold_69498	All Organisms → cellular organisms → Bacteria	2652

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2948052	C2948052__gene_166082	F054110	VLDVNYQPTIKKLLKALQMNGRRYVVDVRQSWSKFDKPCKVYIVNRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVKTYKGGD
C2980236	C2980236__gene_175691	F046433	MSELSASLDVLDVLNPVTPPDLTLQAQDTSRNNPVTYVVDDGYMGTRTSDPCFRKMRRETTEYKALNEFLYFMKMVEPYVPDRIKDNARELRNELVFLGMSELHFAATALAKRLRYHLEVDNKPVYIDVGNSLSQCRVKNEMKSSQYILSLVLSKFPDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIIGGDQVRERISVFEAYNNPGAHKVSVLVMAASSNYIDNGIGADSLWGEATYPVEAYYRLKNDHNDWGVSRVTGVHSSTDSAFGCEVDDIAYRAIEGGILKGEGIDELSLPALANIVRPYRNGEDFDGLSRFRQLLEKG
SRS017120_Baylor_scaffold_11426	SRS017120_Baylor_scaffold_11426__gene_13408	F033081	MAWLFKKGMPQDPKPVFVWPRLVTEIENAGYFSRRKFSILAVGLIIMTIATIKMLLLVPGLNQSVVSLLTRGLETFLPTRWATVTAWTVGMAGVFLMGDLTNYTPSQMFLHKIKATRFEVYNIILFLALLEEQAFRSGSERWNWRERVRASVCFGLLHIANIWYSFAAGIALSVTGFGFLLVYLWRYRKYRSQIIATAAATTVHALYNAIALSLIAVVLAIDIAKLL
SRS017120_Baylor_scaffold_12886	SRS017120_Baylor_scaffold_12886__gene_15146	F084362	MYLMNCAFTVRWSDEKNKPHAKTYATESDAKRAKKWLLEHGVRSVDIAVKINNKPAGSLKDDKPSETEAGQKGFWWEK
SRS017120_Baylor_scaffold_12886	SRS017120_Baylor_scaffold_12886__gene_15174	F103430	MKLITIKAFIGSNNKTKKLEVDKIISTVNANHEAFTLQYPVIGCWKGEVEETAVLYLSGERQKVMNTLSELKEVLDQETIAYQIENDLQLI
SRS017120_Baylor_scaffold_43546	SRS017120_Baylor_scaffold_43546__gene_54427	F103433	MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARVIAGLSPNDASRIPAYIKRVSIFLAVLTAFLLALVVQKIRVLFGGITASVFAIMLAFSPWIAGYARNIYWIEPMLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELVHKNVKIINLWKQAVPVFAAAVVAFFGAYWVNFVSLTDYYGSSDKAASAINARASDRGISGIRSMRAYAVGNFKILRPETYNFINQLVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFIQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSVIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYVLIGLWADYVVKRTVKYE
SRS017120_Baylor_scaffold_46555	SRS017120_Baylor_scaffold_46555__gene_58482	F094007	VEVLELARPSRAGVIDVVDSDGNVVPLDYLGEDFVPDANSYGDEDFTKRNRIIVEMCDLFGRIRRRAGFAERHRGRGDYDRARRIERNRGSDISEVGRLAISACEACPLKLDCELYGKLGGAVLSDVLDYKKVRTATSLTKAGKKRSGWNKGCIDNNA
SRS017120_Baylor_scaffold_54	SRS017120_Baylor_scaffold_54__gene_57	F046433	MIELPPSPDALSELSPVAPPKLLSQAQDASRDNLLVYVKADNYLGTETSDPSFMESRCKTTEYEAINDFVQFIEMTKHYLPDYMEDCAKELIDELAFLGVPELNFAANALAKRLRHHLEVDNKPVYIDVGNSLSQYRAKNEMKSSQYILSLILSKFPDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIISGDQVKERIAGFEVDNDPESHEASVLVMAASGDYLDNGISAYSQYGGATYPVEACYVLKNSPDAGGMSRVTGIHSSTDNTFGYEVDGIAYCAIERGILKGEKINELSLPALANIVRPYRNGEDFDGLSRFRQLLERE
SRS017120_Baylor_scaffold_69498	SRS017120_Baylor_scaffold_69498__gene_90780	F080164	MRPISFVLSLLLGVIGLTLCAAPQVTLRERANAFPLITEKDASEIDAPYAWRMPVVPLRLDNREIRNFAKFPLLPSLSGGILTVRVLVVGDTVAVHRDLMDDFAKRCRTTLGLGVRTAPKLFGIKGMHVYGVQKDGGRQTVDEQVTLHLPGFEKTEKPLHYKGQTGQLVLCEYYGSHRGDLLLNAANARPEIFGELCPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPDRS