7000000175: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160319967

Overview

Basic Information

• IMG/M Taxon OID: 7000000175
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052680 | Ga0031043
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160319967
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 108466423
• Sequencing Scaffolds: 19
• Novel Protein Genes: 20
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	5
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctSdk10	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] torques	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → unclassified Candidatus Saccharimonas → Candidatus Saccharimonas sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F030786	Metagenome	184	N
F041827	Metagenome	159	Y
F042387	Metagenome	158	N
F043990	Metagenome	155	N
F049707	Metagenome	146	N
F051211	Metagenome	144	N
F051212	Metagenome	144	N
F051214	Metagenome	144	N
F054111	Metagenome	140	N
F059076	Metagenome	134	N
F061927	Metagenome	131	N
F063778	Metagenome	129	Y
F064818	Metagenome	128	N
F064819	Metagenome	128	N
F067847	Metagenome	125	N
F071327	Metagenome	122	N
F095632	Metagenome	105	N
F101358	Metagenome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C3095269	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	556
C3150940	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	948
C3154892	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctSdk10	1007
C3173633	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] torques	1503
C3184680	All Organisms → cellular organisms → Bacteria	2536
SRS017445_Baylor_scaffold_20433	All Organisms → cellular organisms → Bacteria	886
SRS017445_Baylor_scaffold_25116	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1725
SRS017445_Baylor_scaffold_34323	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	3189
SRS017445_Baylor_scaffold_41560	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1066
SRS017445_Baylor_scaffold_47452	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	750
SRS017445_Baylor_scaffold_47461	All Organisms → cellular organisms → Bacteria	2701
SRS017445_Baylor_scaffold_53917	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1141
SRS017445_Baylor_scaffold_59322	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1872
SRS017445_Baylor_scaffold_75318	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3421
SRS017445_Baylor_scaffold_77044	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2072
SRS017445_Baylor_scaffold_80019	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1054
SRS017445_Baylor_scaffold_81486	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1328
SRS017445_Baylor_scaffold_84112	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1936
SRS017445_Baylor_scaffold_85636	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → unclassified Candidatus Saccharimonas → Candidatus Saccharimonas sp.	1571

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3095269	C3095269__gene_167616	F043990	MIKKLGIIFTFGVIILGIVMYADHKIERSWIEGEFGVNMSNMNIDEKYRKEEWAPNGDGEKTIILTYDQLDNSFTKLNKLPIKEGLPPNGIPKQFLNTTNGYYKYVVDENDDWNFGILIVDTTQKEICIYNQIF
C3150940	C3150940__gene_182006	F051214	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDIDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWI
C3154892	C3154892__gene_183067	F027205	GPRGLPLIERTHVASRLIVSADDILKAVKESEEFERNALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFEFMDYILDEYDIPKRIRK
C3173633	C3173633__gene_188202	F067847	VRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPALVREFYNGILPEKIMKQVQQDPKYKELDDKLKETELKNL
C3184680	C3184680__gene_191528	F051211	MRVKKAIKIFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEHILKIRRQQYERHVILRVFIDGSTYDIDPSIDIRLAPTLTIAHWDGTSSTATMASLKHLRIYRPHSLHERILSRLRRKLFRGNPKEFYTAIDKWLADTRAHQSS
SRS017445_Baylor_scaffold_20433	SRS017445_Baylor_scaffold_20433__gene_26301	F054111	MNKSLESITHEEFIKLMERLKNLQEFTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLFLEIESLSTADRDLFLNILNKEILFLI
SRS017445_Baylor_scaffold_25116	SRS017445_Baylor_scaffold_25116__gene_32313	F042387	LANSAKMQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGSGEKVVFVYEKDFITSKIRYSQAGEELGKTNYQYSNGKLLSVIDEAVISDSGIQYKRVVTREYRYNGSEVSVNENVKYHSESYAYNLRDENFTHTYVLNGENIIKIHHDISKNVPSGHFYLNPNNMVVIDEEVTYDAKNSPYKNIKGFSALAAEFCSLDEKENTVADYLNFRWASHNPTLIKKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNIDNQTVTTMVYEYNK
SRS017445_Baylor_scaffold_34323	SRS017445_Baylor_scaffold_34323__gene_45228	F071327	AFIFLLLQAHLSYKGAVSDVLRKTNFFSMMLLYVQGILGVFLGIYSPEFSEVSGFSSFLKHFEYGISILLCAGMMTYVYKYIKNNKQLSLKIVVIALVAALLFEYAYPWRIIFG
SRS017445_Baylor_scaffold_41560	SRS017445_Baylor_scaffold_41560__gene_55382	F064818	MDKDEFLKELIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNKEVGDFFEQEMGNAFLKMLEDESKEFRNLFFVQNSFQLSHYYYGFPIMTNDNTGHLCPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKIFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIF
SRS017445_Baylor_scaffold_47452	SRS017445_Baylor_scaffold_47452__gene_63545	F030786	MKRTKIHNVVFQMLVVVIVTGSLQLLLKNGSAAKGGNAMGAKKISLADITGGDDSETGVLKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC
SRS017445_Baylor_scaffold_47461	SRS017445_Baylor_scaffold_47461__gene_63558	F059076	MLSKFCQWQQLIQFIYSFFHFNFLLYLCHPKFTLMTNKILLLGLLLGGVSINAQNINEINAAGKTKQKVGINTNIPTRTLTIKNATADKGKPVLRLVDAPVYSKNVNSDMDADLGGNTATSTNYTDYRPLVVDKVGDVYQGLPIHNMSILTLTISNVNGDWIDSFDTGIDYTKYAVAIMSATFKMPELPKTSSDIIMLRGGNNVPDVKHGFEKYGATIAPATVLLKKTGSNWGIYADYPNIGSYKFPKGSTSLGQEVNGTWVITLLVGKKDAVNFTELEFSQGGNNSGTGITDNNYKTGLENFLKKLE
SRS017445_Baylor_scaffold_53917	SRS017445_Baylor_scaffold_53917__gene_72836	F063778	LMPETISEEAKQELLRQLQDALGLVADADTSAHDVAAITQSAADGHQLTEVMLQQMTAVEAYLKNCQVSINDAIGNIGAIPLDPPPDD
SRS017445_Baylor_scaffold_59015	SRS017445_Baylor_scaffold_59015__gene_80015	F061927	MKKSIFILSVMLILGACSSDSAQKATEKIKNAYSDGLRKTFIEEGVKSCIENSGLKESEAREYCECAMNKLNESL
SRS017445_Baylor_scaffold_59322	SRS017445_Baylor_scaffold_59322__gene_80426	F041827	MKHFLSILALGCLLLSCNRDLENNENNETPAPPKEKLVLLKQLSKGSTVTFQYKNGNEIESVNIDGVGKSDIDYEYDTYGRIVKERRFHRRYDYGETNITYQYDNQGRLASSHAISTEFYPGTGLTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIKQTIEYYNTKNALRNIKGFPALVVEFYIRPLTYELPYYNHGIERIEDLRFIDNIKTRDFHDGDYWEYRYSYDKENTYNGDYPNGVRIHARSHNDPTYDEYLYEISADRSYIKEE
SRS017445_Baylor_scaffold_75318	SRS017445_Baylor_scaffold_75318__gene_104512	F095632	MTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGVGSSVLGTYVGDKAGRQYAETLAETIDSMKTPSTN
SRS017445_Baylor_scaffold_77044	SRS017445_Baylor_scaffold_77044__gene_107390	F064819	MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDIERSDLEDLTRELKDLCECKIRKFFFQNIDETIEIVFSINNIGTIAVEGKMYDENYMNSINFSFQTDLNGIATFSKEISQEIKKYK
SRS017445_Baylor_scaffold_80019	SRS017445_Baylor_scaffold_80019__gene_112562	F101358	MTEKYSASLPPRQPEHLLTQPITTDGMPQERTTHPDTHIIPKRQDVPRYQWNVLRSSGQLDEGWVDVEIITKDGVTLVRMTKPVHRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGVMIKDGRLQPATDTTHATTSSQEQQTEVLPAQSGDTYEHLGGDSARQLVGSVAAKASDTEVDNSLLVERVLGRVE
SRS017445_Baylor_scaffold_81486	SRS017445_Baylor_scaffold_81486__gene_115209	F051212	TSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKNVHLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTDIQANKTWDYITKQIIDIKYSQLYNHLNLEK
SRS017445_Baylor_scaffold_84112	SRS017445_Baylor_scaffold_84112__gene_120399	F049707	VVSEYKSPHNDGHDPYILIWEYGNDAKRAEFSERWATFGDDGWTIWHFRLVDGGVMTFSAREWEQKDDVNHLTTIHFQPKIQNDERN
SRS017445_Baylor_scaffold_85636	SRS017445_Baylor_scaffold_85636__gene_123828	F101358	DTHIIPKRDDVPQYLWNVLRSSGQLDEGWIDREIIDENDVVLVRMTKPVHRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGVMMEDGKLQPVADTTHATHQNDSTDEQETEVLLAQRGDTYEHLGGGSARQLVGSVAAKASGEVDNSLLVERALKR