7000000172: Human stool microbial communities from NIH, USA - visit 1, subject 160765029

Overview

Basic Information

• IMG/M Taxon OID: 7000000172
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052676 | Ga0030542
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 160765029
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 173424013
• Sequencing Scaffolds: 11
• Novel Protein Genes: 12
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042910	Metagenome	157	N
F043413	Metagenome	156	N
F043945	Metagenome	155	N
F051935	Metagenome	143	N
F061388	Metagenome	132	N
F068856	Metagenome	124	N
F070133	Metagenome	123	N
F074899	Metagenome / Metatranscriptome	119	N
F078003	Metagenome	117	N
F090515	Metagenome	108	N
F091068	Metagenome	108	N
F100397	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C3379351	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1187
C3440265	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5469
SRS020869_Baylor_scaffold_10740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2097
SRS020869_Baylor_scaffold_16683	All Organisms → cellular organisms → Bacteria	11654
SRS020869_Baylor_scaffold_1727	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3550
SRS020869_Baylor_scaffold_17282	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	907
SRS020869_Baylor_scaffold_19817	All Organisms → cellular organisms → Bacteria	3801
SRS020869_Baylor_scaffold_3869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	9935
SRS020869_Baylor_scaffold_6194	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	11504
SRS020869_Baylor_scaffold_6420	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1440
SRS020869_Baylor_scaffold_9008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	5179

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3379351	C3379351__gene_216622	F070133	LLAMMVMMWGMAGAQASTDNASMQLIRMNPLAFRKEPVELYSVTHTPNGSFVVIYFTEGEKSELQEMWMELFDSVGTSLLSAKLGKFNPNGEKIPHGQIILKKDRFICEYYPDITSMEVCTQTVYRYTGKRIQKPTTKKLKFGAAPYAQHVGDYMVEKQAHSEDETPFRTVKITHIASGKSKKLMIYDWSFCACSDQDGNLLIAQQNEKGNLEIRSYNAAMQESIVELSGDFLQNENVRDAACIGQTAYMRIRLTNEKSEILLYDITQQKITDSQTLLAVDDNSYIAEIKAAGAVLLSVDGYWNRELQRQKYQINLLNEHFETSRLPLQHESCLYIFTDVEQADVTTIEMDEKSHSYFVCSYSISAGE
C3440265	C3440265__gene_267156	F043413	EHSLTHHRVETRNPVRMSRRMRTIVTLALMLMMLMAVGVAAAKLASVTDYPPPSGLTPEYMSHLVALNEAYDGDLLTLSVNDLVFDGTTVDVAMNVQPKAGKQVFMDMEVTAECAGQTYTLEIEGCGGGDFMSGMFLPDGTGSWSDSPFGFDGVLWDDDMQSPPEGVPIAWTMTFELLQPVWEVEYLPDAQYQALLAGGADTLEAYVQNNWRQQIITVTYGSLVEYQYAAEAAMLADGTITEPLSGSRTEQLLSCGGFRRADTIIVQFTTDFADEYAHPELVGKRIGMGDYDLVIDNVNLSFMRANITMHYEFSAAYTEDEIRQMTNLPNAWRVYVNGQTEAGYDAYANFQQVTNGAYGVDTPEQLTVGFDFYPAETDITRLTFVPIRNMGERWDACHPDAEKGFTLELQE
SRS020869_Baylor_scaffold_10740	SRS020869_Baylor_scaffold_10740__gene_27088	F042910	VAAWAEAGGVLTLHEDGKRVLRVVCTQYPTMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDTAITTLTVSAAGKISFQGLTLAPGAAIRIHHNAGVFAAEMVSDDSTVSILPYRTPESADDLLLRPGVLNEIRVEASAAAFVSGRCKGRYC
SRS020869_Baylor_scaffold_16683	SRS020869_Baylor_scaffold_16683__gene_42060	F043945	MAFLSLLLVLTLGVMPVFAESADHAMDWTHGIGSRYRTDVTSALPFEDELFFISGSQLLRVDDPEYEPEVVCNLEDVIWSEALKQSGYYGQVMLLSGGAELVLFSANEGRLYSFVPPTDDTMVRMQMVAELNYSTVPQMGWKKFPIAKDLYDVTVEQAVYDAQYGLYVIAKDKTDEYQIVWFDLDTGKGEMLEFALEDDENSHLLTDMPGIFQWSGTSSKYERTLYDGKVLTTVDLSSGEATKAVHNWVNTLTLQPIPDYDVTLGDYVTHDAYYAYAPNKDNSAMYFVHDNTVWVMEYDEENSQFSEPHGIDKLPFFAEDTMCGFYWRGFYLIQTHDGLYLCHTGDETARAYLYGEVE
SRS020869_Baylor_scaffold_16683	SRS020869_Baylor_scaffold_16683__gene_42062	F091068	MNEKNQQVSDEQIDALIRSGLWQDEQPLTADEEKLADAAFARAMAKIDRKAKRQKHRTVLHMLDRVVRVAACLIVAVGIAFPIALANSEAFREQILQLVLSINPETGMAHVGMEPAKEERTANVPRMDVPDGWEGLFFPTFLPDDLPLVRCETTRGDQVHSEAYYADETRSLRFEEQDNLDGWNVRAADARVLTIYLHSVPGYLIDRQTEDTHEVSIIWSEGKRMLRVTSIGLPADEAVLVAQSVKKIFAE
SRS020869_Baylor_scaffold_1727	SRS020869_Baylor_scaffold_1727__gene_4883	F068856	AHRGQESVKDSGASAEGNVLAAAHAVLGKGRKGMKRLTSILLALLMLVGMALAEETPDAALGDWYALPSDETVLRLTLREDGTFFFGTEGISGIEGKWRKTTDGEYNLAYTNRSSSLLDVIMSMVDSQAPAPDMTMTARLTESGLDVFYGSTAEGAVVHMARDAEELRTERTPRTDTPLEAFAGTWTMETMFLGTMQLTYTPEMGERQVFCTIDGLTMFPGAGLESFPEGTSFPLTFEDGVLRTTIPLTVQMAASSALVKEIVVDYDLTFFQTADGSLYATLRLSDVPDNPETMFLLVPMEKE
SRS020869_Baylor_scaffold_17282	SRS020869_Baylor_scaffold_17282__gene_43971	F051935	LLAMMVMMEGISCAVAENTNPIVSDWLTELKSKRLIQIVEDEIGEGWTLYQPNGREEEENFSSAENLKEMRFLPVVAQKDNQLRLLILRRQGDLWKVSEQNDRALMRDGWTLQNFSAMPYGNSDWTYIYFDFVDENQKRWNLMLNLGDGYVSSFGTISHYVEGYGTTYINMNYDRGLEFLIDAPAYSRFSYEVYPVERYSFGVEDFDLATCPLTMQEFLVPAIVTCGEEGAGLYIMVQQDVQPIVTLADGDAIEAIPQKWELDWTIVYYQGNYLFMKTENCKMEE
SRS020869_Baylor_scaffold_19817	SRS020869_Baylor_scaffold_19817__gene_54323	F078003	VNEHLAFAQCLQRVLNETELTATEVARRLEMRSRNSIFRILKGKTSPQLNRRFLESFHKHMGEQLTEAQWAALNRALEMDAVGAVEYKSRQALMQLVGAFSEPISPAKVCYLDALGTEKEDSFLHYLQVLFCGALKVNALLFGCCDLGLFRQLQEAIHPVAQRVIVRIDHFIYAGEDEIVSNLVGIQPMVDQPCYHAYLVDAENCPQERLAHYRTGQMTFHVMHQDGSESTVALFLLGKNEFTATVMSTQDLWMSRKVLCDRERFSPIRLLWQLNDENSDFIVYTQQYCKMEHGAAIYYIRPDVPFQYIPLEVLYPVVREGFARMGMTREEYEPNVTALAEIHQARMANMMRRRRPTYIVLNKAAMEEFVRTGRQSDHLHFLRNFTPKERKQILDVLVQQARENPFFHLYFAQEKLPYTMGEVALYDGRALITMSSGSGYDLRTDHRESCITHPFVLRAYKQFYMNTVVARLADTQTESLNQLEELVRRCEKMIREGQKGNTGNEQEKISGQ
SRS020869_Baylor_scaffold_3869	SRS020869_Baylor_scaffold_3869__gene_10771	F100397	MKKLIAILVLSLSLILCLTACGSKMPYDLSETASVELHAYNNDSTEPFAKIVVDGEDVATIVEMFNSLKLKEMKYTEPSIRGYEFWFRDENGSEIVKIELPYGPSPWLVVGGTEYPYQDVNGGVDVDYLAQLVDMTISAGPMQPEDGVDHNAPVEPLFYKSAPGLSIQHDGQSVRALPGTSSWQYMNPDGTSTGIEADSMHPLDAKEYMPVLPAV
SRS020869_Baylor_scaffold_6194	SRS020869_Baylor_scaffold_6194__gene_16473	F061388	MWEEYASQFRATDMRGGEHGAYYAPMDDSVHLNIREVAQGDSIHTPYGTLFHEYGHMTDYLIARSAGQYRYSAYSDLFQGIDAGGKPILRGGSAGGLLGRTAKDELAGHLARIQRQNPTLTTKQAARELTNEAMHKYSMRDRSDISDMLEGAGIGIAYPLGAGHGLD
SRS020869_Baylor_scaffold_6420	SRS020869_Baylor_scaffold_6420__gene_17061	F090515	VTTCCKFGPKTALQGTAPGRVACLEFAGGEKRKTNIAADYAVKALAFTALLCRHIGSIRTFLKS
SRS020869_Baylor_scaffold_9008	SRS020869_Baylor_scaffold_9008__gene_23188	F074899	PHRDPHGEMSGWKQWSKQAVTSSFLDKKPPKSLVQQGLEGSTPVGKDEVGSSNLPSSSNKTL