7000000163: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764305738

Overview

Basic Information

• IMG/M Taxon OID: 7000000163
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052664 | Ga0031254
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764305738
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 98778510
• Sequencing Scaffolds: 21
• Novel Protein Genes: 24
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → Viruses → Predicted Viral	4
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ8	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032313	Metagenome	180	N
F041827	Metagenome	159	Y
F042387	Metagenome	158	N
F054109	Metagenome	140	N
F054110	Metagenome	140	N
F071327	Metagenome	122	N
F072446	Metagenome	121	N
F080164	Metagenome	115	N
F081455	Metagenome	114	N
F085820	Metagenome	111	N
F092229	Metagenome	107	N
F092230	Metagenome	107	N
F095629	Metagenome	105	N
F095633	Metagenome	105	N
F099452	Metagenome	103	N
F103432	Metagenome	101	N
F103433	Metagenome	101	N
F103435	Metagenome	101	N
F103436	Metagenome	101	Y
F105378	Metagenome	100	N
F105379	Metagenome	100	N
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2315100	Not Available	600
C2347415	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	842
C2361587	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1051
C2365675	All Organisms → Viruses → Predicted Viral	1137
C2369149	Not Available	1225
C2380545	All Organisms → Viruses → Predicted Viral	1700
C2382793	All Organisms → Viruses → Predicted Viral	1869
C2383865	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ8	1952
C2383969	All Organisms → Viruses → Predicted Viral	1962
C2386437	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	2210
C2389485	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	2687
C2390833	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae	3018
C2394253	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	4698
C2396639	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	10632
SRS015893_WUGC_scaffold_14335	All Organisms → cellular organisms → Bacteria → Proteobacteria	13629
SRS015893_WUGC_scaffold_2564	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2513
SRS015893_WUGC_scaffold_29254	Not Available	24148
SRS015893_WUGC_scaffold_40214	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	19527
SRS015893_WUGC_scaffold_41295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	3611
SRS015893_WUGC_scaffold_41707	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	7763
SRS015893_WUGC_scaffold_6970	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	859

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2315100	C2315100__gene_118622	F054109	MTGRPKSKKGVKVHTAFKIYPADKARAQAMADKLDLTLSAYVNKAVLEKVARDEKSED
C2347415	C2347415__gene_134044	F042387	MVGLFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENKKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKTNYEYSNGKLSSVIDEVVISDSGIQYKRVVTREYHYNGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPGGHFYLNSNNMVVVDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDENENTIADYLNFRWVSHNPTLIQKSTNLYGSGADSSEYKFQYEYKNNFPIKTKLNINN
C2361587	C2361587__gene_141565	F071327	MEDLFNSVYSTHKGISFSTVVVFGAFIFLILQVHLSYKGRISDVLRKTSFFSMILLYIQGILGVFLGIYSPEFSEASGFSSYFKLFEYGIIILACAGMITYVYMFLKNNQILTLKVLIIALAAALLFEYAYPWRIIFG
C2365675	C2365675__gene_143942	F054110	LLKALQMNGRRYVVDVRQSWSKYDKPCKIYIVSRMYTEEEYKLTFPEKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVKAYKGGD
C2365831	C2365831__gene_144046	F103435	LPENIFVAELTSRDYPRNPWNYVSQLISKLTYSYLIDNPEFENIFSEILFNQSEEEFYEFYKAIDRFYNGSEIFIIVSNDEYSDMVTQMMCNVIRRMYGIHPQVIYDIDDILSIRDDIDFSPQGAQLAYLQRSAYYKLEAKRSLEPLQIWYPFDMNTYTNALE
C2369149	C2369149__gene_146032	F085820	MRSTFYLFAMLFLATTFFSCETVEPSPRPTWGEIVNPIEAFMYPRDLKVFADGEEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSQLVGNPTEPVANECHFHRTWLTQGVKAIRVVRTHADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGNRSIFAKPLGETVEADYLWLPGRDVFGLVAPLNPDGLKQRIVLRLANGTEIEKELSKKRTK
C2380545	C2380545__gene_153403	F092229	DVLECMMDINPIVRTKIYDDYEFAKDVAERRFGSTIEKLDLRTVLQKCITRPYNSILNNIYFRYFNSELIDDLFKLGQSSKVLDLAIKYECEYYTVNAAKTNIRRYNTDAYYNKFAADSNIISSHRSLHDPQVNAVKSAEFTYDLLVASRAEEFNPEIVREIFVKYGLKPNSSRNLYNRINDNLNLFYYIEDYLDEYREEGRFIYGTKEYKILKELRSLPLMVVLTQLTRKNDSGYILNSNLELVKG
C2382793	C2382793__gene_154996	F054110	VLDVNYQPTIKKLLKALQMNGRRYVVDVRQSWSKFDKPCKVYIVNRMYTEEEYKLTFPYKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVRTYKGGD
C2383865	C2383865__gene_155844	F095629	MTFKERMMRELIICVCLLGCFSIANANNIEQPKEVKIVHNDDSVILHKKIYQLEKRIERLEELLKKEGK
C2383969	C2383969__gene_155924	F105379	MVIHFPLSQSDIESLLSISKLLKCDKILYDRNYINPIIGVGPEKSYFQTTSFMVDLSPHINNLLVNISDLKNLDKITQLQPSKENPEIAIHKPVVSVFNWDAEYVKACMNSLREYQIDDNIIARTDEFHNTDCYNELMAGSASTGAFRINIGGYMIDIPKSAMPTLKSDHVVATVYNAPNKNFNILRFKITKRNGIIVNQSMLFLPY
C2386437	C2386437__gene_157977	F081455	MENFLTKEISALISKHFEFTNNSDLIKDPIISDDNIIDIPPAEEIGAEKVNMSDIIDCVQEALQQPLENKDSSIAVNFSQMVNKPKEEVKTEVNSVPPEGETKVNVLFPKTEHILGNYVDYDSFIKIKESNTDKVVRAVRLLNYKMSDQNAAAAFAQFVSTFNPECNPNKRLRYELIRHQGREKYLVIRLSTVVNGTTKYYADIYPDLNKIDLDHHLISSAKK
C2389485	C2389485__gene_160487	F041827	MKHFLSALALGGLLLSCNRGLENNENNETPAPPKEERLVLASLYEFGSNVRFQYKNENEINRMTIDGPHREASMDFEYDTYGRIVKERRFDHKSDYGETNITYQYDNQSRLTSSHAISTQYYPDTGYTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIEQTIEYYNTKNALRNIKGFPALVVEFYIRPLTYELPYYNLGIQRIEDLRYIDNIKTRDFHNGSYWEYRY
C2390833	C2390833__gene_161784	F072446	MRKLLFLLSGLCLYCLAACDNDHEPTKPVRPFHGDTLAQIAWNFRFIVENHYHSIPGIVPEGTTYRVPVIPRSVEDKTEKEYNDMDLGKEAHLVFRATVHGDTINRRRKELDAIALQLGRLTETSIGTSPVLCGVKSIEAVGIAENGNTYDLSWEIKLRIRDYFGRVKHRSSGIITIDCEDTRSKTAKYVVPLGRIREYELAEHIQPELKFYLPVKRCMDFSSIRFAITLFNGKVLSFQHKLPSKSVLQELPSKSVLENYQQYGYEREGTYFTTLWPVPDYKYNEREW
C2394253	C2394253__gene_165519	F032313	MACDNNTPQEKPHEQEKHEVPVPKPKPQFDEVGERIWYGRTPAMRLDSTDYGAGLTSVFGMLTSKISKQRFDSLFKQTVWEIKDIRVVETDLSLAKKNPGIMGWVTTTEFTCRNGVIVLHRQGIDVNHVDTVNYVYDEVGNEIVLEGTGIRWSVLRLNKNAVEFLQRGRTMWGPFDWYYGRNSGRSEVTLEEK
C2394253	C2394253__gene_165520	F032313	MACDNDTPQEKPREQEKHEVPVPKPKPQFDEVGERIWYGRTPAIRLDSTDYGAGLTWVLEMRTSSIPKQRFDSLFKQTVWEIKDICAVETDLSLAKKIPRFVGGSIAKEFTCRNGVILRHMQGIDINCVDTVNYVYNEDLNEIVLEGTGIRWYVLRLNKNAVEFLQQGHNIWGPFDWYYGRNSGRSEVTLEAK
C2396639	C2396639__gene_169383	F103432	MKLIHSLFSLPLLLVLGGFLCLTACQDDAEPTQRTGLISTDSLFHAAEVYDGKAFEHVVSTTATGLRVSEPRRVVPMLPRQLHVEMEGKTIFRRHNLPSVSAYSFQVLAVGDTIYRQKESDAQFNADLDALFHQSIGIAPRLFGVKELSVLGIDSRGKTRDLGNYSYPLLRGVRIYMAFRSREGVFHEHYEAASVDTFSVKSNWLFKTKAEPSLYAPSFRLLVWEQPAEGCTKLRFTLTLVDGRSLVAEVPLY
C2396639	C2396639__gene_169384	F080164	MVGLTLCAAPQVTLRERANAFPLITEKDATEVDAPYAWRLPVVPLSLDNREIRNFAKFPLLPSLSGGILTVRVLVVGDTVAVHRDLMDDFAKRCRTTLGLGVRTAPKLFGIKGMHVYGVQKDKSRQAVDEQVTLHLPGFEKAEKPLHYKEQTGQLVLCEYYESHRGDLLLNAANARPEIFGELCPVVDFHFPVELRRAYAWLLLEMELEDGTKLSTSLQHYDEQTSILDHPDRS
SRS015893_WUGC_scaffold_14335	SRS015893_WUGC_scaffold_14335__gene_17708	F103433	MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAVDSKEMMSQDCNPSQVEPYVSQYGLQARVIAGLSPNDTSKIPAYIKRVSIFLALLTAFLLALVVQKIRALFGGITASVFVVMLAFSPWIAGYARNIYWIEPMLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLAPIIFFELIHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAASAINAKASYRGISGIRSMRAYAVGNFKILRPETYNFINQIVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFIQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSVIGAFCWLALMPGYALPHAHINGIIFYIPLLLFVYVLIGLWADYVVKRTVKYE
SRS015893_WUGC_scaffold_2564	SRS015893_WUGC_scaffold_2564__gene_3088	F095633	MGNYEKSTEAWRREGLTEGELRTMGALAVEATEELKKTTIRKEVVLLGGVPFNSWDEFAKAVQEMAAHSYEPISVKINTKRLIATAFLDDEGEMSVEERFVPEEVFIDLSRTRCDAEEDRNHKSYEFTCPALMEHPDGKLYLTRKAYVISVIDVNGSQEVDFNIIYGGLN
SRS015893_WUGC_scaffold_29254	SRS015893_WUGC_scaffold_29254__gene_37114	F105378	MNVKVYVDKIKKWVQISSDEVLDVNKNLSDLKDKEAAITNLGLYEKFISKEALESGFLPDVFTPDNIVTDSTHQFVTDEEKNKWNNKLNVPVPMQDHLANNQIGYDSVNSKFYIGLNNQNVLLGGSSCFDNIIVINGFFSGNSQPTVIRNNKFNEAGQLITPVFVDVQCVEYTAGDLGEVSVSYTTDAISIYNTGSFTGSFQCLIVYPLGSVNE
SRS015893_WUGC_scaffold_40214	SRS015893_WUGC_scaffold_40214__gene_54903	F105380	MSILQLDASQYVKQGRIFKKFDSNLLDSYMDGRQNNYNINLAELDDQISDGIVYADRNGKMIYKFGAKKIIQTAITNGLEISGLNKDLEMKHYSFWVPDLYFVSFYSFNPNEDLYIAYRSKDEEFICLTNIWPDGSSYAEDYFPNGDRLTLKRLCKGSMMSDVSSSDYDEWRNNAVTRASQFVNKFVSARGNSDLDFVGSALRSKVPRHNIKKCAVFLGTITKEQENVNTYEEFMEWTKNTKWFK
SRS015893_WUGC_scaffold_41295	SRS015893_WUGC_scaffold_41295__gene_57900	F103436	CSKSDAEILESLKDWVSKCDVSSKREALKKIDSAFALWGGAEYEAAVHLLDENEVFLKKSDWPYYALGIEILKARKHEFFNE
SRS015893_WUGC_scaffold_41707	SRS015893_WUGC_scaffold_41707__gene_59602	F099452	MDKTYAALLQETLSKIYELKDLNNRDRGKALTIFIGERLNRELILSSMNIFNLYKEIVDLDDVSLLNDLRKTPWYKDWFIDDKRNSDLIDLSRFNFNSLARFEKEEYLRNVERYDFEAVNPVDGYGLFDTLTKDNDVELFKLAAENILINHGFFNKTDYNFCDVPNEYMGDKEVSVYMCLLNIENMIFVDKKTLDTTILYNIVKDHICGFIYFTLFDRLNKDTRTRAM
SRS015893_WUGC_scaffold_6970	SRS015893_WUGC_scaffold_6970__gene_8617	F092230	MRQAHKRTVDKLKAYLLKVFFPLFIVCIIFVAFFRQIGCGSDGEYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDGIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNSSEYINMAYGEGSVEVSDSTSTGEVQNTEEKEARDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMFLIVIAMTIGYYSYLKPETVYGFYCKLRRKEKYPSDVNLVKRIGFLIIILP