7000000162: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763860675

Overview

Basic Information

• IMG/M Taxon OID: 7000000162
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052663 | Ga0031015
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763860675
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 69612519
• Sequencing Scaffolds: 14
• Novel Protein Genes: 15
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	4
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → unclassified Neisseria → Neisseria sp. oral taxon 014	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-10	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043235	Metagenome	156	N
F043990	Metagenome	155	N
F054111	Metagenome	140	N
F057446	Metagenome	136	N
F058221	Metagenome	135	N
F061927	Metagenome	131	N
F064819	Metagenome	128	N
F071327	Metagenome	122	N
F080165	Metagenome	115	N
F085821	Metagenome	111	N
F097490	Metagenome	104	N
F097525	Metagenome	104	N
F097526	Metagenome	104	Y
F105377	Metagenome	100	Y
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2191512	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	556
C2192832	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	564
C2195212	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	579
C2197786	Not Available	597
C2222667	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	886
SRS014894_WUGC_scaffold_15779	All Organisms → Viruses	24021
SRS014894_WUGC_scaffold_23242	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1626
SRS014894_WUGC_scaffold_40141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → unclassified Neisseria → Neisseria sp. oral taxon 014	526
SRS014894_WUGC_scaffold_46819	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1424
SRS014894_WUGC_scaffold_50638	Not Available	755
SRS014894_WUGC_scaffold_60418	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	512
SRS014894_WUGC_scaffold_63606	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-10	539
SRS014894_WUGC_scaffold_65022	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	577
SRS014894_WUGC_scaffold_68012	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	892

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2191512	C2191512__gene_112063	F071327	MEELFNSVYSTHKGISFSTVVVFGAFIFLLLQAHLSYKGAVSDVLRKTSFFSMMLLYVQGILGVFLGIYSPEFSEVSGFSSFLKHFEYGISILLCAGMMTYVYKYIKNNKQLSLKIVVIALVAALLFEYAYPWRLIFG
C2192832	C2192832__gene_112432	F105380	MSILELDSSQYVKQGRIFKKFDSALLDSYMDGRQTEYSINLSELDDQISDGIVYADHEGKMIYKFGAKKILQTAITNGLTITGLASEFKMKHYSFWVPDLYFISYSSFNPNSDLYIAYRSKDAKKICLTNIWSGSGNVDFYSPNGGRLVYNRLCKGRMMDDISA
C2195212	C2195212__gene_113098	F043235	PDTDLKRISVVDELGTQLTDTLLDRPDRSKRELHQWAVNGDDIVQLRHMDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQE
C2197786	C2197786__gene_113875	F097526	AALLHAHIRAFAADGNRQRLNRLTEAMRIAGEMEKAGRNGHPDPAEQARRVQWDCQFTVLQQQARMAHCEIVNADNAAVSRLTRQCEQNGSCDTAIPSPHDDGYGFTAGLRDIPLNTSQTALLWRMALLTIAEMTDTAPSLVACYLNGTGGEHLGRALAEKTVYPVTVVSNLAWLLHDQYKSGQLQRDLRHTAATSGL
C2222667	C2222667__gene_120793	F064819	GKDRIKFSNIVRLNKEEPVFVKMKVRISTETMVSEENLDIERSDLEDLTRELKDLCECKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDENYMNSINFSFQTDLNGIATFSKEISQEIKKYK
SRS014894_WUGC_scaffold_15779	SRS014894_WUGC_scaffold_15779__gene_9749	F105377	VRAEVRDFDKLPLLTPEEAFERAREVGRNRLLFDHDYRVRGLDDWKAIETLLRQYDVDDAFIASFGLKRFEEIFDVFAMLSDRGWSLWQTSANVYVDGELRTVPAIRAHYRGD
SRS014894_WUGC_scaffold_23242	SRS014894_WUGC_scaffold_23242__gene_16796	F097525	MQQKKIMFKIQNAYQKIIFSIHGHRERRGDFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFEQISANQEKPAEIGFIEPELAFEYQNKKLIVLLCYDIAPVSYGEEPYELTFPLDDKTLAMIIKELGEAVASFKKE
SRS014894_WUGC_scaffold_40141	SRS014894_WUGC_scaffold_40141__gene_35494	F061927	MKKSIFILSVMFILGACSSDSAQKATEKIKNTYSEGLRKTFIKEGIKSCIENSGLKESEAREYCKCAMNKLNESLSNDEIVDISMDNSPKDLNDRIEKAISSCIGE
SRS014894_WUGC_scaffold_46819	SRS014894_WUGC_scaffold_46819__gene_43640	F043990	MIKKLGIIFTFGVIILEIVVYANHKIERSWIEGEFGVNMSNMNIDEKYREEEWVPNGDGEKTIILTYDQLDSSFTKSNKLPIKEDLPPNGIPKQFLNNTNGYYKYIGDENDDWNFGILIVDTTRKEICIYNQIF
SRS014894_WUGC_scaffold_50638	SRS014894_WUGC_scaffold_50638__gene_48789	F085821	MSNIFEQLAPLAETKKQQTTVAKFIEKGFKFTRQPDAQKFTFLVYDFFIAGNMPAVQLCIDYLVAQGYPTAENEKKFLNWVFMEPVYYLKYFISDASTQKKLHHDLLNLWYESTKRQLLEQDKGKHDEAYIDEWVKANVNKTLSIIRSGETIASCKEDVAKHSRTLNDEYEQNIGLLDEYCRALLYTAETTESQQELVAEIQSHIALLKDLYKKVNKIK
SRS014894_WUGC_scaffold_60418	SRS014894_WUGC_scaffold_60418__gene_62488	F097490	LLCIISCSERKEIEVYNMKIDENKKEVLVEIRNNTENNYYLLSPVVSIMTKYLQHIGGEMIEGQIHHKKIDNIVCSVYIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYSNEMGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM
SRS014894_WUGC_scaffold_63606	SRS014894_WUGC_scaffold_63606__gene_67491	F058221	KEELKTEIKEIESVLSFENPRKTLGVITNGVTEKYLGGIMDSSFAQNAYSLADKFLLPSLEAGSAKLLTNALLKRVKPSMKKTLIGLGVAVLTPIIIMQIKKRLDNFQQRETAKSLSKLI
SRS014894_WUGC_scaffold_64684	SRS014894_WUGC_scaffold_64684__gene_69271	F054111	LQEFTFLEYIIAPEADIFYFNFMKKTVKIKWGLDYGLSLETKALYTSDKDLFLNILHKEILSLENQ
SRS014894_WUGC_scaffold_65022	SRS014894_WUGC_scaffold_65022__gene_69876	F080165	MKSIKILLLLLSLTACNNKTKTISTLDLEKVVINYKDLPAPVKKKVFPPNNGLITFGEENREEYESFQETNNPKKYEYYTKQDPQLAWVHDPYIRNKKTKQEYSIDKDGPMGSRYIIYGDSLYISNHY
SRS014894_WUGC_scaffold_68012	SRS014894_WUGC_scaffold_68012__gene_75337	F057446	MNSISFGKTTVTSYPEYFEIADNKKTNKLLYLSASFVFIAIYLFDLYQNDFDFGKVSHFKTISAVLWLVIFVLQFWLINTESKIEKSKIKEVVVRKNRWASIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR