7000000158: Human stool microbial communities from NIH, USA - visit 1, subject 764062976

Overview

Basic Information

• IMG/M Taxon OID: 7000000158
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052654 | Ga0030483
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 764062976
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 153834685
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CAG:74_58_120	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044554	Metagenome	154	N
F055775	Metagenome	138	N
F056682	Metagenome	137	Y
F061388	Metagenome	132	N
F089054	Metagenome	109	N
F090513	Metagenome	108	N
F099406	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C3194355	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	658
C3194661	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	659
C3195749	Not Available	663
SRS014979_WUGC_scaffold_24040	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CAG:74_58_120	1632
SRS014979_WUGC_scaffold_2483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	621
SRS014979_WUGC_scaffold_28190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	2681
SRS014979_WUGC_scaffold_3205	Not Available	35141
SRS014979_WUGC_scaffold_5792	Not Available	19252
SRS014979_WUGC_scaffold_7824	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	8543

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3194355	C3194355__gene_187547	F090513	MAKYVRKMEWKLLHIKHILYMQPFGALKIVPQSVGNKNGTKAVLQGWAAAFVPFFTY
C3194661	C3194661__gene_187697	F090513	MAKYVRKMEWKLLHIKHILYMRPFGALKITPQSVGNKNGTKAVLQGWAAAFVPYMLSFTYGNTA
C3195749	C3195749__gene_188211	F044554	CAAACGGSAQGKCCAAGGGSVSWRSASPCIFFHTQAYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFVSDTRAKSILFLLFENKIAHLQGQYRFNSHRYCFSAFLVL
SRS014979_WUGC_scaffold_24040	SRS014979_WUGC_scaffold_24040__gene_50177	F061388	MGGRGGSSHRASAGGGSAALNFLRRAYGANHANAVFAMLQNAPEHIRSMWDDFSGQFRATSMGRNERGAFYAPADDSVHLNIRSVARGDVISTPYSVLFHEYGHMTDYLIARSGGYGRYSAYSELFQGFDSSGNAILHHSASGGLLGRTAKKELEGHLSRIRRYDPNMTRDQAADRLISEAMGKYSMRDRSDISDMFEGAGIGKAYPLGSGHGTNYWAGRDSGKEIFAEITSAEAAHPGSLMAIKEYFPKTYKVYQDMLKARKKK
SRS014979_WUGC_scaffold_2483	SRS014979_WUGC_scaffold_2483__gene_3756	F056682	VAEKPHEQNTMKMQSRVGKVVNQSVGQSEMYPASFWAFPSKNRSTFPIQELRKNREDQEV
SRS014979_WUGC_scaffold_28190	SRS014979_WUGC_scaffold_28190__gene_59747	F056682	MKMQSRAGKVANQPIGQDKMYSASFREFPSKNHGPFSFQELGKIHENQEVL
SRS014979_WUGC_scaffold_3205	SRS014979_WUGC_scaffold_3205__gene_5369	F055775	MAQIAQQDNLVIEVATTATALDDDTKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGKSPKYTIDIIKADSGAVEAIELN
SRS014979_WUGC_scaffold_5792	SRS014979_WUGC_scaffold_5792__gene_11113	F089054	MLTSGKFLVSFEVPGHTKEYTEGFTEEMVIPYRTEELNTYLRYPNQEINPGHKHSTYIRLKLREILEVNLTDITIIDIISLP
SRS014979_WUGC_scaffold_7824	SRS014979_WUGC_scaffold_7824__gene_15485	F099406	MAEVGYNSKFEGLEVDSRLENVVQAAPGTSSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDYVNKKYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGTKVLESLGMVSTGVDSGYLDLSIFSGNSGSLDENSFAKVLDAYNNNITLGKLDGDYYYLNYFLEGNDFENNFKLKIVFASFANADSAVGASEYDIEIQVGTFVVIQDKTYEAMNNMVTLSNTILSYLNFMAMPPKVVTTLANLPKGAHNIIANVASATNLSMTVSSEHVGREWQVRVNNTTGTDITQPLPTSGQFQSMSGDSVVIPKNSFIELSIWYINDKLVIRVGEQA