7000000155: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160765029

Overview

Basic Information

• IMG/M Taxon OID: 7000000155
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052651 | Ga0031070
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160765029
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 43448863
• Sequencing Scaffolds: 5
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F051214	Metagenome	144	N
F061925	Metagenome	131	N
F071327	Metagenome	122	N
F071329	Metagenome	122	N
F081456	Metagenome	114	N
F097525	Metagenome	104	N
F101358	Metagenome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C928510	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	998
SRS020862_Baylor_scaffold_12162	All Organisms → cellular organisms → Bacteria	133730
SRS020862_Baylor_scaffold_25357	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	8127
SRS020862_Baylor_scaffold_28394	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	1426
SRS020862_Baylor_scaffold_7547	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	31675

Sequences

Scaffold ID	Protein ID	Family	Sequence
C928510	C928510__gene_68853	F097525	MQQKKIMFKIQNAYQKIIFSIHGHRDRKGNFEDWLKVEVKVKDDLEGKYYTQVSECMLFSEVLGLLEWFEQISANQEKPAEIGFIEPELAFEYQNKKLTVLLCYDIAPVSYGEEPYELTFSLDDKTLAMIIKELGEAVASFKKV
SRS020862_Baylor_scaffold_12162	SRS020862_Baylor_scaffold_12162__gene_16750	F101358	MTEKHSASLPPRQEHLLTQPITMDGAPEKRTAHPDAYIIPKHENVPQYLWNVLRSSGQLDEGWIDREIIDKDGTVLVRMTKPVHRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGVMVKDGKLQPVADTTHTTHQNDSTDEQETEVMPAQGDDTYEHLGGDSARQLVGSVAAKASDGEVDNSPLVERVLGRVE
SRS020862_Baylor_scaffold_24774	SRS020862_Baylor_scaffold_24774__gene_36876	F061925	LKNCELFSSSTTDYIDWKKPKSIDSIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKHNHYLTDCDTDEEV
SRS020862_Baylor_scaffold_25357	SRS020862_Baylor_scaffold_25357__gene_37909	F018385	MMTEYVNQWESYKELSIENDRDPVLDDPIIYGVNVKHFTLTVYSPEGRVSKYWNARILQDQLGRCRIACPRDGKILCFAWFEWTSYMFSHDGLNELVFMPRTNSRLPSTLWNTKEVK
SRS020862_Baylor_scaffold_25357	SRS020862_Baylor_scaffold_25357__gene_37910	F071329	MLPVAKIIISGLTSIGAGMIASKLTKPLVSNANGIAKILLWFGSVGTGVAASAIVAREVELQFDATVKAVQEARDNVEIED
SRS020862_Baylor_scaffold_25357	SRS020862_Baylor_scaffold_25357__gene_37911	F051214	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHQIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQIMHDKIDLKDEWI
SRS020862_Baylor_scaffold_25357	SRS020862_Baylor_scaffold_25357__gene_37912	F043991	MSKKNPSVIDYFDLNGDLNEEAYEFEEVKLDEYIDKRSNVKPSWIGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA
SRS020862_Baylor_scaffold_25357	SRS020862_Baylor_scaffold_25357__gene_37915	F027205	VASRLIVSADDILKAVKESEEFERKALNEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFVVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSTK
SRS020862_Baylor_scaffold_25357	SRS020862_Baylor_scaffold_25357__gene_37916	F036281	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPTPFFYESRQYHIKSFMRVPGSTDLWITAERERGHWYTFRLSDDQKSKFTRHTITNEKGHQTYDWVLKNVEWAADTIRYF
SRS020862_Baylor_scaffold_28394	SRS020862_Baylor_scaffold_28394__gene_45189	F071327	MEDLFNSVYSTHKGISFSTVVVFGAFIFLLLQVHLSYKGAISEVLRKTAFFSMILLYIQGILGVFLGIYSPEFSEASGFSSYFKLFEYGIIILTCAGMITYVYMFLKSNQILTLKVLIIALAAALLFEYAYPWRIIFG
SRS020862_Baylor_scaffold_7547	SRS020862_Baylor_scaffold_7547__gene_9624	F081456	MFEEPPIYYILISLIFLIVFGAVAFATWLVWLTPVSFMAKLVMTAIGFLLCAITVILYTISAE