7000000142: Human stool microbial communities from NIH, USA - visit 1, subject 160421117

Overview

Basic Information

• IMG/M Taxon OID: 7000000142
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052638 | Ga0030505
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 160421117
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 66690254
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067720	Metagenome	125	Y
F105374	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1083645	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1587
SRS016753_Baylor_scaffold_16114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	21125

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1083645	C1083645__gene_77165	F105374	LRPGFGAAENIRYLVLSKGVFAMKKRVALLVALCIWKVVAAQTPYGEMPERFRPDTLPCRLGGGVCFGMDGLDAAIPRGEGASSCRDPRVVFVAGDTLITFISVAGVANTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVARSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP
SRS016753_Baylor_scaffold_16114	SRS016753_Baylor_scaffold_16114__gene_38371	F067720	MSSTTYEHFVDTNKMYAAQEQFRGITKMVTKCHRFAVLGNMVRNAGQLPQPFWLGTACGGGSHSLSAGVARA