7000000130: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764042746

Overview

Basic Information

• IMG/M Taxon OID: 7000000130
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052614 | Ga0031354
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764042746
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 48829060
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F043235	Metagenome	156	N
F043991	Metagenome	155	N
F054109	Metagenome	140	N
F067847	Metagenome	125	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2312318	Not Available	528
SRS062540_LANL_scaffold_41282	Not Available	1313
SRS062540_LANL_scaffold_44493	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	698
SRS062540_LANL_scaffold_74972	All Organisms → Viruses → Predicted Viral	1093
SRS062540_LANL_scaffold_77297	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	941
SRS062540_LANL_scaffold_79645	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6628

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2312318	C2312318__gene_92630	F054109	KSKKGVKVHTAFKIYPKDKERAQIMADKLDMSLSAYINKAVLEKLAHDEKSEASTETN
SRS062540_LANL_scaffold_41282	SRS062540_LANL_scaffold_41282__gene_19621	F054109	MTGRPKSKKGVKVHTAFKIYPADKARAQAMADKLDLTLSSYVNKAVLEKVARDEKSED
SRS062540_LANL_scaffold_44493	SRS062540_LANL_scaffold_44493__gene_22554	F043235	LCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTRKIVDTLIQVSGTAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH
SRS062540_LANL_scaffold_74972	SRS062540_LANL_scaffold_74972__gene_55480	F018385	MAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNIKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLYYEEVK
SRS062540_LANL_scaffold_77297	SRS062540_LANL_scaffold_77297__gene_58465	F043991	FDLNGDLNEEAYEFEDVKLEEYIDKRSNVKASWVGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPANVHPDFRA
SRS062540_LANL_scaffold_79645	SRS062540_LANL_scaffold_79645__gene_61877	F067847	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPALVREFYNGILPEKIMKQVQQDPKYKELDDKLKETELNNL