7000000119: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159369152

Overview

Basic Information

• IMG/M Taxon OID: 7000000119
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052603 | Ga0031082
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159369152
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 96895722
• Sequencing Scaffolds: 12
• Novel Protein Genes: 14
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Psychroflexus	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
Not Available	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → Cardiobacterium valvarum → Cardiobacterium valvarum F0432	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036281	Metagenome	170	N
F040685	Metagenome	161	N
F041827	Metagenome	159	Y
F043991	Metagenome	155	N
F051212	Metagenome	144	N
F051214	Metagenome	144	N
F054111	Metagenome	140	N
F059076	Metagenome	134	N
F061925	Metagenome	131	N
F070224	Metagenome	123	N
F081454	Metagenome	114	N
F097526	Metagenome	104	Y
F101359	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2551881	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Psychroflexus	764
C2572375	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1081
C2585046	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1613
C2593232	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2945
SRS023964_Baylor_scaffold_27889	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	11704
SRS023964_Baylor_scaffold_28022	Not Available	579
SRS023964_Baylor_scaffold_29673	All Organisms → cellular organisms → Bacteria	2144
SRS023964_Baylor_scaffold_41767	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	12361
SRS023964_Baylor_scaffold_60060	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	2763
SRS023964_Baylor_scaffold_63048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → Cardiobacterium valvarum → Cardiobacterium valvarum F0432	1127
SRS023964_Baylor_scaffold_63463	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1082
SRS023964_Baylor_scaffold_64459	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1534

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2551881	C2551881__gene_155242	F081454	MKAFKLVLLLFITSASLVFGQEKRYFFKYEYHPNSKYLIKLKTDMDGGYKFVGSKEVIDKIGMNEVEMKMNMNIGSTISTQKKQDNNIPFVLEYTDYISEAEINGEKVNRKIPIQGVKLRGDIINGKKMEVKNVEGNIDEDTKKILTESIKQFSAIDTDFPKEGLKIGDSFDMVIPYKQSIPNAGDIEMKMNVKYKLLKVEKEEAYFDMLIDFVMGDKNVKNIDLSASGDGKGFLLFDMKNNYFTSQNI
C2572375	C2572375__gene_163333	F041827	NRDLENNENNETPAPPKEERLVLASLYEFGSNVRFQYKNGNEINRMAMDGPHGEASMDFEYDTYGRIVKERRFHHRSDYGETIITYQYDNQSRLTSSHAISTQYYPDTGYTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLFVENGKVVKSLDENNQIIETIEYLNPKNTLRNMKGFPALVVEFYIRPFTYKLPFYNGIEHIEDLRFIDNIKTRDFHNGSYWEYRYSYDKRKSHDNDYLEIEEVNIYEKSHNDPTHDNYLSSASPARFYTKEK
C2585046	C2585046__gene_168495	F051212	FMKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKNVHLVITKDSIIYHLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTNIQNNKTWDYITKQIIDIKFSQLNNHLNLEK
C2593232	C2593232__gene_172131	F059076	MATIDIVYVFHFFHFNFLLYICHPKFTLMTHKILLLGLLLGGVSINAQTINETNAAGKTKQKVGINTTIPTRTLTIKNSTPNDGKPLLRLVDSPVYSKNVGSAMDADLGGNTATTTNYTDYRPLVVDKVGDVYQGLPINNMSILTLTIDNVNGDYIRKFDTGIDYDKYAVAIMSATFKMPDPSSGKIVMMRAGNGVIPNVDFGGGKYGVTTAPATVLLKQNGSNWGIYADYPNIGPYEFPSGSTSAGQLVNGKWIITLLIGKKEAVNFTELNFNQGGSPEGVGNSNTTYATQLQNFLKTL
SRS023964_Baylor_scaffold_27889	SRS023964_Baylor_scaffold_27889__gene_29238	F070224	KHERPMKRLLFLLLTLLHCTAWSQVYNAPDSIYVASGAVYIPPISGEPIYLLASPLRPVKTRGSKIRTRDWVKADYSNQNNLIIFGFGDSLVLENRFAYYAAGFPEMKEYELYYKGTGEEITKEDFDSIKFTRMPTALRELKKYKLPRTRRSSGEVDRWQHPHLFVIEHDKKAGRYYKYRIALVIYMDYDHPEACIIH
SRS023964_Baylor_scaffold_28022	SRS023964_Baylor_scaffold_28022__gene_29387	F097526	EMEKAGRNEHPDPAEQKRRARWDSNLAGLQQQARMAHCEIVNADNAAVSRLTRQCEQNGSCDTAIPLPRDDYGFAAAVRDFPLSETQTALLWRMALLTIAEIADIAPELAAIYLNGTGGEHLGRALVEKTVYPVTVVSNLARLLHEQHKSGQLQRDLRHTAAASGLAGTEAMQAAVPVSRQQDGRQSS
SRS023964_Baylor_scaffold_29673	SRS023964_Baylor_scaffold_29673__gene_31355	F054111	MNKPLESITHNEFLKLTERLKNLQEFTFLEYIIAPEADIFYFNFMEKTVKIKWDLDYGLFLETEALSTADRDLFLNILD
SRS023964_Baylor_scaffold_41767	SRS023964_Baylor_scaffold_41767__gene_47040	F051214	MSGKIVTHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDIAIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWL
SRS023964_Baylor_scaffold_41767	SRS023964_Baylor_scaffold_41767__gene_47041	F043991	MSKKNPSVIDYFDLNGDLNEEAYEFEDVKLDEYIDKRSNIKPSWVGKYSHQLHFDLADDTEVSFYKGLNIVYADINFSNGIRTILFKCRQKKNLTRFISRVLEIAQGDLSNVHPDFRA
SRS023964_Baylor_scaffold_41767	SRS023964_Baylor_scaffold_41767__gene_47045	F036281	MITLIKVDEGPVDIHELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDRWIMYMTNTEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPTPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDLKSKFTRHAITNEKGHQTYDWVLKNVEWAADTIRYF
SRS023964_Baylor_scaffold_60060	SRS023964_Baylor_scaffold_60060__gene_74686	F061925	MSWEYSINLDSEESVSSVVTDLKICELFSSSTTDYIDWKNPKSIDDIPYDARFYTDKKKTIYIAINSFSKNIFSTLKSILAKHDYHLTDCDTDEEVTLEHIFRSVI
SRS023964_Baylor_scaffold_63048	SRS023964_Baylor_scaffold_63048__gene_81057	F097526	MATTIYTQDDYRRLCERLEDDTVVVTLRAHIDAFAAKGNRVLLRRLTEGLRIAGEMEKAGRNGHPTPEEQARRERWDSNYGRLQQHARMAGDQITNADNAAVSRLTAQCERNGRCDTDTELSVARDDAYGFAAALRDIPLNEKQTALLWRMAVLTIAEITDATPSLVAHYLNGIGGEHLGRALAGKTVYPVTVVSNLAWLLHEQQK
SRS023964_Baylor_scaffold_63463	SRS023964_Baylor_scaffold_63463__gene_81959	F040685	MKKLLFKLFFALAFASISLHGQEKIQQVEVHIFGGMALYSSHYTINSLKKEFSAKPLMGQNEDLPKEISLPNTPKNWEAFTKKINLDKFKKLRDGPSQQAFDGQDEVIIIKTNKKTYRKMNAFGNDHDRETWYDLLQIIAKEFGKKSIYE
SRS023964_Baylor_scaffold_64459	SRS023964_Baylor_scaffold_64459__gene_84432	F101359	LIFKMKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSAANGSVTYRDANGNKRKIYLRSGMSENISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTNFTSYTGQGITDSYKETVK