7000000114: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160643649

Overview

Basic Information

• IMG/M Taxon OID: 7000000114
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052598 | Ga0027980
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160643649
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 11011069
• Sequencing Scaffolds: 2
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051214	Metagenome	144	N
F067847	Metagenome	125	N
F071329	Metagenome	122	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C723826	All Organisms → Viruses → Predicted Viral	1930
SRS019976_Baylor_scaffold_1608	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2397

Sequences

Scaffold ID	Protein ID	Family	Sequence
C723826	C723826__gene_21691	F067847	MFSHIIRVKGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYSGILPEKIMKQVAEDPKYKELDSKLKETELKNL
SRS019976_Baylor_scaffold_1608	SRS019976_Baylor_scaffold_1608__gene_1445	F051214	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFVVTYDPIHRIIVMRVFLHDEDLTIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWI
SRS019976_Baylor_scaffold_1608	SRS019976_Baylor_scaffold_1608__gene_1446	F071329	MLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGVAASAIVAREVEKQFDETVKAVKEARDHVEIED