7000000112: Human stool microbial communities from NIH, USA - visit 1, subject 158944319

Overview

Basic Information

• IMG/M Taxon OID: 7000000112
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052596 | Ga0030465
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 158944319
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 129159305
• Sequencing Scaffolds: 12
• Novel Protein Genes: 13
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	3
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides salyersiae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F050794	Metagenome	145	N
F055775	Metagenome	138	N
F057001	Metagenome	137	Y
F058555	Metagenome	135	N
F064725	Metagenome	128	N
F075481	Metagenome	119	N
F078005	Metagenome	117	N
F083451	Metagenome	113	N
F083452	Metagenome	113	N
F089590	Metagenome	109	N
F092228	Metagenome	107	N
F102167	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C3358291	Not Available	1000
C3360227	Not Available	1024
C3380747	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1412
C3387988	All Organisms → Viruses → Predicted Viral	1650
C3390148	All Organisms → Viruses → Predicted Viral	1736
C3401822	Not Available	2481
C3411289	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	4096
C3412203	Not Available	4399
C3412845	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	4649
C3417769	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	12231
C3417935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	14407
C3418105	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides salyersiae	21448

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3358291	C3358291__gene_167729	F058555	KKDELGCLRLPAGSLVCPVDYKPVTNKDGKKVTAVKYSNKKDNIRGSGMVIEKKCKQVTAYLSIINVQKHVFLRNRMREGYRDRIEVNTDDFIDILSDGIAYFCYRHVVENCHEDIDYQLKTLKAYAEGEIRIALSDIMIYSYKAKKNEYTKDIFVGKKTSVYKCLNKNLSSDERRNMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVAYLLNELNKKLIDIGMQEISQSTIYRYISMFLDMCKKSISDLYEEVVKNNGVVNTKDNNNVTIGHIRASYKGSVLYILISTDYIINVFLGKKSAEMSKAG
C3360227	C3360227__gene_168860	F050794	MLYTSHYFVNNRQKQLLDHTYALSRDQAFDYMTEFNKRLSDKVGIKCTMDILLPTDDDNANIIIEYNGIIKKLMKEAEKLELDTDAIKEMMRDLLNELKDDIDLNILIFDVTQLLIKYNLFRLDAITEQEFKDSFVRMDSRNMEIKKLTLSDIKKVVMMMEDRYSYISSI
C3380747	C3380747__gene_181084	F083452	MSGRIKIKSKDKDKRPKIDVFKVIESRFKNMNELRDLIDMDPRKGLVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDLIERYIKR
C3387988	C3387988__gene_185765	F102167	MDINQIKKYLPLGWDVVDLIDHGIIDLDIMNGKMMGEYVAVLMIKSYDKTNDHILTAFSFHDKDMDKLRMLIGNAIMAVGYRNNPLTGDGNTAIK
C3390148	C3390148__gene_187181	F057001	MPIQVPRARANLMTSKDLNKVQNEVKKANDKTLTGAVKAWSQLFKSGKEINEILKDNDIKVDKAIVPALVNLAKDKEIVIQLCKEILPRVNNTFCSYKEVEREYYDKNDKDKNKKLKINEIEDVAILGSSHKRFGYNEPIEFDFGIYYETFNDADKRIVKCAVPIKRYTFSLIAKCITYYLTHPKNDR
C3401822	C3401822__gene_195628	F089590	MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWFREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDTFADAYLVKVFKAVFKRINVFKMFSFSKNIPDETFDDIRRIADDEVKDKS
C3401822	C3401822__gene_195629	F075481	MRLRISLKAVFCLGLSLFLSSCGSRRQVSDTSIDNRLISRIETMIDEVMDRKIVEIRTSDLNADIVITERKFDTTKEVDPSTGERPVSSQTDAHIVIGRRDSTVTTDSLGVDKTITGIEDIDKKTDIKHKDIDDKEESRWPMAIIFMSILGILVVLFVLLKRFGLIK
C3411289	C3411289__gene_203840	F042095	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPFNTYVEFISRKPGMANVDWGDGIKEQFPMTKVQGQDKYCIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPVDNHLYADGRRDVQRAVSIDFTCDIYYANIQVCKMTAFPIVDIPGLEFLVVSHTLYVNDGIPVDKLSRSKKLTYIDLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNIQTLELSSCYLDRYIKEFNDLPKLTSLKIHPGPSDMWNYFDINTLPFFEVDKINPNITDFYFLDDWVNGERRTGWNDDNMSGRGLEHLTSFVAAHSNSLRMDKLPDYIYEMRAITWFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYIAAYPTENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPE
C3412203	C3412203__gene_204713	F064725	MTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITERIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYDWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYERMWPNAFDKYIKFI
C3412845	C3412845__gene_205376	F078005	MKKSEFVKKLEKIIDMIKAEDDGFEYGGKVIFYKEDDDNYEISVKNIEMDLTVEANTIASMDDRIFAYLMSEVYKQKFTKAITISEDEDDEDN
C3417769	C3417769__gene_212497	F083451	MNVNLINKINNFSNVDKNEREKQVLDLLMSRKDIRKLVEKSNECYSRMDFVGAMRYRQEIKDIVDRESKIMLTKSESLIGLMNNADNEYKFNMLVWLHSMMCMVDVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMAKCKKEIDYLMKGTSKSFQISFAVRSDELREMIENMVGDNIREGYDMFKEEAKMTKETDRSKIEEFNKKLDHD
C3417935	C3417935__gene_212960	F092228	MKKKCTLVLISVLTVACIVFAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNTTVNLPSNGSLINDNLFYINGDKLCCLDTTTNTRKTIDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDKTDEYGYSFKVVKQYIFKKYDLKSCKLLKSKIANYVNEIRYVTVCKDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIIRKTVESPYNGIWKLEVGSNKPVKIAEKCDCDELLATKNFLYCYTINYILPRGVADLWVKGYLIDQLAIS
C3418105	C3418105__gene_213622	F055775	MAQIAQQDNLVIEVATTAATLDGDTKKKLIECIEGGTITDVILVTKEDEKKISHARVVSWLVDTTGNSPKYTIDIINANSGAVKAIELN