7000000107: Human stool microbial communities from NIH, USA - visit 2, subject 764447348

Overview

Basic Information

• IMG/M Taxon OID: 7000000107
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052586 | Ga0030578
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 764447348
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 127176918
• Sequencing Scaffolds: 4
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042936	Metagenome	157	N
F073656	Metagenome	120	N
F078004	Metagenome	117	N
F090513	Metagenome	108	N
F101355	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2618070	Not Available	519
C2655202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	655
C2703008	Not Available	1030
SRS042628_WUGC_scaffold_28567	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1226

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2618070	C2618070__gene_145240	F101355	KNLAAINMIARSRKNRYIMIEPPFQHGIADMAFWFIQWYLPSAQSPQPKGAGAVFPYVLPRCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFFFFKIYLKKIDFFQNIA
C2655202	C2655202__gene_160605	F090513	MAKYVRKMEWKLLHIKHILYMQPFGALKIAPQSVGNKNGTKAVLQGWAAA
C2703008	C2703008__gene_180302	F042936	MGRGGGKGRVWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKLYFRSRLRGK
SRS042628_WUGC_scaffold_28409	SRS042628_WUGC_scaffold_28409__gene_57516	F078004	TRLNRIPRNFPDVNPVSDIFYFLFYSGIYVPAVSRRIQLPALLSAVSKHLSSRNTDFLFRDLLFRKSSTGGLSAVAGSAALDVHMLRHTLIITIINALYCLTVDADRMAWMRQGIAERFSSLSLLRKALTAGAVTVTGVLAAHHDVSLAAQTVLIIGTIFHNAF
SRS042628_WUGC_scaffold_28567	SRS042628_WUGC_scaffold_28567__gene_57983	F073656	MTMEQDQEQMQGALYVAVDDGNKIIAMERSRRSDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHNYLLDPSTVTEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWTFVNPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRNGFDNIERKYASDLSDEGRAAKREE