7000000100: Human stool microbial communities from NIH, USA - visit 1, subject 765135172

Overview

Basic Information

• IMG/M Taxon OID: 7000000100
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052576 | Ga0030523
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 765135172
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 111425065
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides salyersiae	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032286	Metagenome / Metatranscriptome	180	Y
F042936	Metagenome	157	N
F055775	Metagenome	138	N
F068941	Metagenome	124	N
F088921	Metagenome	109	N
F092228	Metagenome	107	N
F099451	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2068323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	800
C2082684	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	928
C2098344	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1143
SRS018817_WUGC_scaffold_21141	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	6066
SRS018817_WUGC_scaffold_23157	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	6770
SRS018817_WUGC_scaffold_27214	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides salyersiae	6525
SRS018817_WUGC_scaffold_8650	Not Available	1286

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2068323	C2068323__gene_146254	F032286	MVKWVCQIVTPVRHRALVFDARLSAGNTANYTLVMGNTRSFCRLMCLCVKWRNVKPDSKHRSLPDSALFRADNRTEQKTISPFSLALIFTFDFAALSERRSCPEDRFRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNADFHAYGQDRKGQKIEGRTPLCSQNSPFRNG
C2082684	C2082684__gene_152529	F092228	MKKKCTLVLISVLTVACIVFAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNTTVNLPSNGSLINDNLFYINGDKLCCLDTTTNTRKTIDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDKTDEYGYSFKVVKQYIFKKYDLKSCKLLKSKIANYVNEIRYVTVCKDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIIRKTVESPYNGIWKLEVGSNKPVKIAEKCDCDELLATKN
C2098344	C2098344__gene_159352	F068941	MNNKKFIIGVVLLLLLMLGGTYAYYKWSSSDNMNVNVKIDGGTVTFNGGSNITSTIIPTASKEEGIKKDITVKASKAGVTMNLYMNLTTMPDELKEKSFEYEIYYNSSTLVKKGNFGVYNSNTNTSGIAYATSGVTTLTLFTGRDVSTNSADKYTLYLWFNGKDYTNPNTMQSKKLSFDLYATGEDAVLAGN
SRS018817_WUGC_scaffold_21141	SRS018817_WUGC_scaffold_21141__gene_44529	F042936	MGRGGGKGRVWKPKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKLYFRSRLRGK
SRS018817_WUGC_scaffold_23157	SRS018817_WUGC_scaffold_23157__gene_48353	F088921	LGGCKKIAVKTSALGAKIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKSAMIRDKMRSES
SRS018817_WUGC_scaffold_27214	SRS018817_WUGC_scaffold_27214__gene_57639	F055775	MAQIAQQDNLVIEVTTTAAALDSNTKNKLIACIEGGTIADVVLVTKEVEKKISHARVVSWLVDTTGDSPKYTIHIINANSGAVAAIALN
SRS018817_WUGC_scaffold_8650	SRS018817_WUGC_scaffold_8650__gene_20087	F099451	MEIKNVGQLRKIIENLPDDFEIEMRVRRKLTDEELKNCRYPYPYDTEYLILEFEDIGVSNKVLCLGVTSKND