7000000096: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 508703490

Overview

Basic Information

• IMG/M Taxon OID: 7000000096
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052572 | Ga0027978
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 508703490
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 10358293
• Sequencing Scaffolds: 3
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F067847	Metagenome	125	N
F103434	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
SRS058186_LANL_scaffold_1285	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	9187
SRS058186_LANL_scaffold_3043	All Organisms → cellular organisms → Bacteria	35333
SRS058186_LANL_scaffold_3649	All Organisms → Viruses → Predicted Viral	4148

Sequences

Scaffold ID	Protein ID	Family	Sequence
SRS058186_LANL_scaffold_1285	SRS058186_LANL_scaffold_1285__gene_639	F067847	MFSHIIRVKGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVKEDPKYKELDDKFKETELNNL
SRS058186_LANL_scaffold_3043	SRS058186_LANL_scaffold_3043__gene_2266	F103434	VVGFRPRRGRYLENGPHVVEVTLAVVKEGRTGRRFERGETFVVDKVLVQPSAGNALKATESRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIIKGPESLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTESR
SRS058186_LANL_scaffold_3649	SRS058186_LANL_scaffold_3649__gene_3158	F036281	MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWSAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERERDHWYTFRMSDAQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF
SRS058186_LANL_scaffold_3649	SRS058186_LANL_scaffold_3649__gene_3159	F027205	VASRLIVSADDILKAVKESEAFERKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSAK
SRS058186_LANL_scaffold_3649	SRS058186_LANL_scaffold_3649__gene_3162	F043991	MSKKNPSVIDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNVKPSWVGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFTCGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA