7000000091: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 861967750

Overview

Basic Information

• IMG/M Taxon OID: 7000000091
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052567 | Ga0027979
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 861967750
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 9332063
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	4
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F051214	Metagenome	144	N
F071329	Metagenome	122	N
F074985	Metagenome	119	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C907619	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	525
SRS045254_WUGC_scaffold_1965	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	548
SRS045254_WUGC_scaffold_3821	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	687
SRS045254_WUGC_scaffold_4491	All Organisms → Viruses → Predicted Viral	1093
SRS045254_WUGC_scaffold_5938	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	943

Sequences

Scaffold ID	Protein ID	Family	Sequence
C907619	C907619__gene_14079	F018385	GLHPWSLSLISGTETMMAENRWDPYAEVPIETHRDPVKDDHLIYGVNVPHFTVTVYSPDGRVNKYWNARILEDMLGYCRIACPRDGKILKFKWSDWSVYMFTHDGLNELVFMPDSGRKIITQLFEKEVK
SRS045254_WUGC_scaffold_1965	SRS045254_WUGC_scaffold_1965__gene_414	F027205	EEFERKALTEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSAK
SRS045254_WUGC_scaffold_3821	SRS045254_WUGC_scaffold_3821__gene_1332	F071329	YSKGKLMLPVAKIIISGLSSIGAGMIASRLTKPLVSNANGIAKILLWFGSVGTGVAASAIVSREVELQFDATVKAVQEARDHVEIED
SRS045254_WUGC_scaffold_4491	SRS045254_WUGC_scaffold_4491__gene_1789	F074985	MELTDGGWYKTPRIIKGTDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRIYDVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFSVSNFEELYIDQTFRRLTPVIFRHFDHSWIVMGLELSDSEEAEWFIYLKRQNGEGMTRVHFTKDQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDPTTGEQKYLLDH
SRS045254_WUGC_scaffold_5938	SRS045254_WUGC_scaffold_5938__gene_3378	F051214	AFLKGAHMPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYICNNREYQIACEFLRQIMHDKIDLKDEWIA