7000000090: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160158126

Overview

Basic Information

• IMG/M Taxon OID: 7000000090
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052566 | Ga0027961
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160158126
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 41287094
• Sequencing Scaffolds: 13
• Novel Protein Genes: 15
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctSdk10	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] torques	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F040149	Metagenome	162	N
F043235	Metagenome	156	N
F051213	Metagenome	144	N
F054111	Metagenome	140	N
F061925	Metagenome	131	N
F064818	Metagenome	128	N
F067847	Metagenome	125	N
F071329	Metagenome	122	N
F081456	Metagenome	114	N
F089056	Metagenome	109	N
F103431	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2883482	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	514
C2884078	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris	518
C2896780	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	630
C2899282	All Organisms → cellular organisms → Bacteria	661
C2912433	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctSdk10	937
C2912793	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	949
C2913549	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] torques	978
C2915858	All Organisms → cellular organisms → Bacteria → Proteobacteria	1086
C2923600	All Organisms → Viruses → Predicted Viral	2170
C2924676	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2840
SRS018149_Baylor_scaffold_1382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	1280
SRS018149_Baylor_scaffold_17414	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1133
SRS018149_Baylor_scaffold_23325	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1235

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2883482	C2883482__gene_58639	F051213	KASKLLWAVVVALTLVFTSCDWVGDEPTIEGKLDKFFDSQAQRKSFRILTGSGKPYNHKVDWHIIGITDPYSDTYLTKKVDTLSNGDLKISYDWVSFTVRENKSVIDVEVQENETGKVRAVYLNTNTSGRHITLPDMRVTQRAK
C2884078	C2884078__gene_58898	F089056	MFLKTQKMNKKMNVFCKIILPLLCIISCSKRKEADNTMVLEKNHTFFLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPTRRFKDKEVIIFMYYINSCCDNGQLLEECDVSFISITFTNKNKILFGKGI
C2896780	C2896780__gene_64896	F051213	MKVSKLLWAVVMALTFVLTSCDPFSQNEPTIEGNRYKYFDSSAQRQSFRVVNGSGKQYNHKVDWHIIGIQEENSDTYLTKKVDTLSNGDFRISYDWVTFTVKENKSVIDVEVQKNETGKDRSVFFATSNSYKQAYLPNMIVTQRAK
C2899282	C2899282__gene_66087	F054111	MNKPLESITHKEFLKLTERLKNLQEFTFLEYIIAPEADIFYFNFMEKTLKIKWDLDYGLFLETEALSTADRDLFLNILNKEILFLI
C2912433	C2912433__gene_72773	F036281	LITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKIYNAKEYYDYWAAREGKPAPFFYESQQYHVKSFMRVPGSADLWITAEREHGHWYTFRMSDDQKSKFTRHTMTNEKGHQ
C2912433	C2912433__gene_72774	F027205	KGPRGPPLIERTHVASRLIVSADDILKAVKESEEFEKKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFVVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSAN
C2912793	C2912793__gene_72974	F043235	TDLKRISVVDEFGTQLTDALFDRPDRSKRELHQGAVNGDDIVQLRHMDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTRKIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH
C2913549	C2913549__gene_73388	F067847	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPALVREFYNGILPEKIMKQVQQDPKYKELDDKLKET
C2915858	C2915858__gene_74707	F061925	MSWEYSINLDSEEAVSSVVTDLKNCELFSSSTMDYIDWKNPKSIDDIPYDARFYTDKKKTIYIAVNSFSKNIFSALKSILTKQNYHLTDCDTDEEVTLEHIFRSVI
C2923600	C2923600__gene_79761	F071329	MLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGIAASAIVAREVELQFDATVKAVQEARDHVEIED
C2923600	C2923600__gene_79762	F018385	GTETMMAEYDNQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLYHEEVK
C2924676	C2924676__gene_80626	F081456	MFEEPPIYYILISLIFLIVFGAISFATWMFWLTAISFFAKLVVTAIGFLLAAMTVILYTISAE
SRS018149_Baylor_scaffold_1382	SRS018149_Baylor_scaffold_1382__gene_1274	F103431	MIDLDALVVGMLFFIQLFLQGIAWRVAIAHFLHAERGNAAAAAFDGAFRENIADCHAEDDNDKDAESQKKGFHVCIPED
SRS018149_Baylor_scaffold_17414	SRS018149_Baylor_scaffold_17414__gene_18679	F040149	VADEGAKELRWEVLIEEQGIPVLFVEVEAWYDGRVSSSEILRSVGIALEREPRLAPVWSHDSKDAIHDFIYDTSVPKGHTLTAVRERETVVAQLLNIHRMF
SRS018149_Baylor_scaffold_23325	SRS018149_Baylor_scaffold_23325__gene_27017	F064818	KFIVVLLPYFTYMDKDEFLKKLIAFIADNSSELHPKIFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNKEVGDFFEQEMGNAFLKMLEDESKEFRNLFFVQNSFQLSHYYYGFPIMTNDNTGHLCPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPNLLHYIKRFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQAAKQRILQRK