Sample 7000000084

Basic Information
IMG/M Taxon OID	7000000084 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052560 \| Ga0031072
Sample Name	Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 158256496
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

7000000084 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0063646 | Gp0052560 | Ga0031072

Sample Name

Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 158256496

Sequencing Status

Permanent Draft

Sequencing Center

Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	59614252
Sequencing Scaffolds	18
Novel Protein Genes	20
Associated Families	11

Dataset Contents

Total Genome Size

59614252

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	3
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctSdk10	1
All Organisms → Viruses → Predicted Viral	2

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales

All Organisms → cellular organisms → Bacteria

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctSdk10

All Organisms → Viruses → Predicted Viral

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Ecosystem Assignment (GOLD)

Name

Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Type

Host-Associated

Taxonomy

Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Maryland: Natonal Institute of Health

Coordinates

Lat. (^o)

39.0042816

Long. (^o)

-77.1012173

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F051214	Metagenome	144	N
F059076	Metagenome	134	N
F061927	Metagenome	131	N
F063777	Metagenome	129	N
F064819	Metagenome	128	N
F092232	Metagenome	107	N
F101359	Metagenome	102	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
C2187996	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	650	Open in IMG/M
C2188046	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	650	Open in IMG/M
C2188970	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	658	Open in IMG/M
C2189024	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	659	Open in IMG/M
C2196067	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
C2196563	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
C2201900	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	809	Open in IMG/M
C2228787	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	6902	Open in IMG/M
SRS021960_Baylor_scaffold_10077	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	520	Open in IMG/M
SRS021960_Baylor_scaffold_12062	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	735	Open in IMG/M
SRS021960_Baylor_scaffold_17478	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctSdk10	529	Open in IMG/M
SRS021960_Baylor_scaffold_22939	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	567	Open in IMG/M
SRS021960_Baylor_scaffold_27462	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1060	Open in IMG/M
SRS021960_Baylor_scaffold_29238	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	850	Open in IMG/M
SRS021960_Baylor_scaffold_29570	All Organisms → Viruses → Predicted Viral	1389	Open in IMG/M
SRS021960_Baylor_scaffold_7341	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	752	Open in IMG/M
SRS021960_Baylor_scaffold_7349	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1893	Open in IMG/M
SRS021960_Baylor_scaffold_7758	All Organisms → Viruses → Predicted Viral	1057	Open in IMG/M

Sequences

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

7000000084: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 158256496

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2187996	C2187996__gene_93678	F036281	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDAQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF
C2188046	C2188046__gene_93703	F101359	MKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQYQGNNSINGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTSFTSYTGQNFTDSYKETVK
C2188970	C2188970__gene_94168	F063777	MKVLNIKISALPPENNSFWMKLLLHLCVPFLFIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCTKSNEYLDDGYIFYKLTDKKSATDLNGAIISEFQEDIGNYILLQNLILEDNQLKNQLISFNKNTGKITVLADIKDFFWLEFDSETKTINGYNNKEQIEIAISE
C2189024	C2189024__gene_94193	F101359	MKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSTANGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTNFTSYTGQGITDSYKETVK
C2196067	C2196067__gene_97775	F061927	MKNSIFILSAMFILGACSSDSAQKATEKIKNAYSDGLRKTFIEEGVKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNPPKDLDERVDKAIDSCIGE
C2196563	C2196563__gene_98032	F061927	MKNPIFILSAMLILGACSSESAKKAYNDSFRKTFIEEGVKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNPPKDLDERVDKAIGSCIGE
C2201900	C2201900__gene_100817	F059076	GGVSINAQNINETNAAGKTKQKVGINTTIPTRTLTIKNSTPNDGKPLLRLVDSPVYSKNVGSAMDADLGGNTATSTNYLDYRPLMVDAVGDVYKGLPINNMSILTLTISNVKGDWISNFDTGINYNKYAVAIMSATFKMPSPASGGIVMLRGGSNTPSVDHGGNKYGVTTAPATVLLQQHGANWAIYADYPNIGSYEFTSGSTAIGNLVNGTWVITLLVGKRDAVNFTELNFNQRGKDDGQGIKDNTYKAGIENFLQKLD
C2228787	C2228787__gene_118862	F092232	MINQAKFIADYNERNRPKFNDKFFQKSDDDIIEDLKDVILSCQRDKFYTIRVEKFEVIDDYAEIQRLLTGEETPTISIKDSDLKILKVTYYTAIGNQEDTFDVLIAVPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTSSASAKTQSITLKTNSNAVKMLRNFFEFKLSDGETFKKLASFSVYLFDHKVTLFEYYLARFGWYKTISEFKFDHVIKVTEEDPQDDEYDTFVVQNSHMKTPIYISAVRSVLDADRILQSFVAAFIISINKYATKKFTLDNIYNTDFWICKLGFNFVSSETSVFTKGNAIIESLENSYDIPTQKRLRLPDEIKSNIYSVLKWMASEFSYIRLKDNLDASSKRIRWSEYIAAMYIMIINLKLRRLPEKPDPNVEVLRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGEGNGKKVAQNIRAVDISQLGIIDVNTSSASDPGVGGMLCPLNDKVFEYNSFTNEPEPNTWDANFDELLKIYRDQKGYTSAIALAEDAGLELTDDRNPESVAFDTEYLGNLIGKIAPTKAFETQLRPAFINMEDSGSIIFED
SRS021960_Baylor_scaffold_10077	SRS021960_Baylor_scaffold_10077__gene_8120	F018385	SRISGTETMMAEHVNRWDPYKELSIEKDRDPVLDDPIIYGVNVPHFTVTVYSPDGRVNKYWNARILQDQVGNCRIACPRDGKILCFNWFKWTSYMFTHDGMNEVVFMPDSRRRIVSKLSFDHVPMKEVN
SRS021960_Baylor_scaffold_12062	SRS021960_Baylor_scaffold_12062__gene_9950	F018385	MAEYENQWGPYNEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDMGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSNRKTISRLYHEEVK
SRS021960_Baylor_scaffold_17478	SRS021960_Baylor_scaffold_17478__gene_15455	F027205	VASRLIVSADDILKAVKESEEFEKKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIP
SRS021960_Baylor_scaffold_22939	SRS021960_Baylor_scaffold_22939__gene_21674	F064819	MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMISEEDLDIERSDLEDLMRDLKDLCECKIRKFFFQNIDETIEIVFSINDIGTIIVEGKMYDESYMNSINFSFQTDLNGIATFSKEISQEIEKCK
SRS021960_Baylor_scaffold_27462	SRS021960_Baylor_scaffold_27462__gene_27373	F059076	GGVSINAQTINETNAAGKTKQKVGINTTIPTRTLTIKNAAADKGKPVLRLVDAPVYSKNVNSAMDADLGGNTATTNHYTDYRPLVVDAVGDVYQGLPINNMSILTLTIDKVNGDYIRKFDTGIDYDKYAVAIMSATFKMPDPSAGKMVMMRAGNAVIPSVDFGGGKYGVTTAPATILLNKTQLTNNWEIHADYPNIGPYEFPSGSTSSTDLNLVNGKWIITLLVGKKEAVNFTELNFNQGGSAEGVGFSNPTYKTGLENFLKKLE
SRS021960_Baylor_scaffold_29238	SRS021960_Baylor_scaffold_29238__gene_30187	F018385	MMAEYVNQFESYKELSIEKDRDPVLDDPIIYGVNVKHFTLTVYSPDGRVKKYWNTRILADYLGRCRIACPREGKILCFAWFEWTSYMFTHDGMNELVFMPRSNSKLPSTLWKGKD
SRS021960_Baylor_scaffold_29570	SRS021960_Baylor_scaffold_29570__gene_30708	F027205	MRAVKESEEFERKALAEARKRDRADGKTPREVLHPDHKPGREIVLDYIKNPERRRTPRCSVRLEKRTANNSYRFVVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIRK
SRS021960_Baylor_scaffold_7341	SRS021960_Baylor_scaffold_7341__gene_5699	F043991	MSKKTPSVIDYFSLNGDVVEEANEFDGISLEDWIDKRSSIKPSWVGQYSQQMHFDLPDDTEVSFYKTLNVIYADILFTGGVRTILFKCRQKKNLTRFISRVLELANLGPKHVHPDFRA
SRS021960_Baylor_scaffold_7349	SRS021960_Baylor_scaffold_7349__gene_5712	F051214	MPGKIVPHETHLRIDTEFIELKDCFEAFRRGVEYREKNDFEDILVICNTTDLIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDIAVKPIYIYNNREYQIACEFLRQIMHDKIDLKKEWL
SRS021960_Baylor_scaffold_7349	SRS021960_Baylor_scaffold_7349__gene_5713	F043991	MSKKNPSVIDYFDLNGDLIEESEEFAGIKLDDYIDKRSKVQPTWMGRYSQQMHFDLESGTEVSFYAHSGLVYADILYAEGIRTILFKCRQRKNLTRFISRVLELANGEPKNIHPDFRA
SRS021960_Baylor_scaffold_7349	SRS021960_Baylor_scaffold_7349__gene_5716	F027205	VASRLIVTADDIMKAVKESEEFERRALVEARKRDRADGKTPRDVLHPDRKPGREIVLDYIKNPDRRRTPRCSIHLERRTENNSYRFTVDVSQVRNRDLADEIEKDLFVFMDYLLDEYDIP
SRS021960_Baylor_scaffold_7758	SRS021960_Baylor_scaffold_7758__gene_6043	F043991	MSKKNPSVINYFDLNGDLNEEAYEFEDVKLEEYIDKRSNIKPTWVGKYSHQLHFDLADDTEVSFYKGLGIVYADINFPNGIRTILFKCRQKKNLTRFISRVLELAQGDSSNIHPDFRA